Regulon of LexA in Psychromonas sp. CNPT3
| Regulator type: | Transcription factor |
| TF locus tag: | PCNPT3_02010 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Psychromonadaceae/Aeromonadales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
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Position: -52
Score: 4.5 Sequence: CCATGTATAGATATACACTG
Position: -37
Score: 5.6 Sequence: CACTGTCTATATTAACAGTT
Locus tag: PCNPT3_02010
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -43
Score: 5.6 Sequence: TACTGTTCATAATAACAGTA
Locus tag: PCNPT3_07113
Name: null Funciton: Regulatory protein RecX
Locus tag: PCNPT3_07108
Name: radA Funciton: DNA repair protein RadA |
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Regulatory protein RecX
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radA
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DNA repair protein RadA
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Position: -65
Score: 5.6 Sequence: TACTGTATGAATAGTCAGTA
Position: -45
Score: 5.4 Sequence: AACTGATCATATAAACAGTA
Locus tag: PCNPT3_13378
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -55
Score: 6 Sequence: TACTGTATATATAATCAGTT
Locus tag: PCNPT3_05579
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -76
Score: 6 Sequence: TACTGTCTATATAAACAGTT
Locus tag: PCNPT3_08640
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -64
Score: 5.2 Sequence: CACTGGATATAAAGTCAGTT
Locus tag: PCNPT3_11040
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: PCNPT3_11035
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Position: 74
Score: 5.3 Sequence: TACTGTATATAAAACCATGA
Locus tag: PCNPT3_06468
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Position: -56
Score: 6.1 Sequence: TACTGTTTAAAAAAACAGTA
Position: -33
Score: 5.6 Sequence: CACTGTTCATACAAACAGTA
Locus tag: PCNPT3_10460
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -37
Score: 5.4 Sequence: TACTGTTTTAATTAACAGTG
Locus tag: PCNPT3_12972
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -28
Score: 5.2 Sequence: TACTGATTAAATAGACAGGT
Locus tag: PCNPT3_01364
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -43
Score: 5.1 Sequence: TACTGTTAACTTATACAGTG
Position: -28
Score: 4 Sequence: CAGTGGTTTTATTTACAGGG
Locus tag: PCNPT3_06983
Name: SSF52540 Funciton: hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family |
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SSF52540
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hypothetical protein, P-loop containing nucleoside triphosphate hydrolase family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |