Regulon of SiaR in Psychromonas sp. CNPT3
| Regulator type: | Transcription factor |
| TF locus tag: | PCNPT3_00805 |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization |
| Effector: | Glucosamine-6-phosphate |
| Regulog: | SiaR - Psychromonadaceae/Aeromonadales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 6 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - SiaR
- By TF family - RpiR
- By effector - Glucosamine-6-phosphate
- By pathway - Sialic acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -188
Score: 4.4 Sequence: AATGGAGCTCAACTCCAAG
Position: -93
Score: 4.7 Sequence: GTTGAAGTAAAGCTCCGTT
Locus tag: PCNPT3_02946
Name: siaP Funciton: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
Locus tag: PCNPT3_02951
Name: siaS Funciton: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
Locus tag: PCNPT3_02956
Name: siaT Funciton: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter |
|||
|
siaP
|
Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
|
||
|
siaS
|
TRAP-type transport system, small permease component, N-acetylneuraminate transporter
|
||
|
siaT
|
TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
|
||
|
Position: -76
Score: 5.5 Sequence: ATTGAAGTTTTACTCCAAA
Position: -18
Score: 5.3 Sequence: TTTGGAGTTTAACTACATA
Locus tag: PCNPT3_00800
Name: nanE Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: PCNPT3_00795
Name: nanK Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: PCNPT3_00790
Name: yhcH Funciton: Uncharacterized protein yhcH |
|||
|
nanE
|
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
|
||
|
nanK
|
N-acetylmannosamine kinase (EC 2.7.1.60)
|
||
|
yhcH
|
Uncharacterized protein yhcH
|
||
|
Position: -215
Score: 5.2 Sequence: ATTGAAGTTTCACTCCAAA
Position: -157
Score: 5 Sequence: TTTGGAGTTTAGCTACATA
Locus tag: PCNPT3_02205
Name: nanP Funciton: Sialic acid transporter |
|||
|
nanP
|
Sialic acid transporter
|
||
|
Position: -90
Score: 4.2 Sequence: AAAGAAATATTTTTTCATT
Locus tag: PCNPT3_09404
Name: nanM Funciton: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase |
|||
|
nanM
|
Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase
|
||
|
Position: -39
Score: 4.7 Sequence: AACGGAGTTTAATTTCTCT
Locus tag: PCNPT3_00810
Name: nanA Funciton: N-acetylneuraminate lyase (EC 4.1.3.3) |
|||
|
nanA
|
N-acetylneuraminate lyase (EC 4.1.3.3)
|
||
|
Position: -89
Score: 4.3 Sequence: AGTAAAATTAAACTTTATT
Locus tag: PCNPT3_13193
Name: glmU Funciton: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
|||
|
glmU
|
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |