Regulog SiaR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization |
| Effector: | Glucosamine-6-phosphate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - SiaR
- By TF family - RpiR
- By effector - Glucosamine-6-phosphate
- By pathway - Sialic acid utilization
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | ||
| Psychromonas sp. CNPT3 | 10 | 6 |
| Moritella sp. PE36 | ||
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | ||
| Aeromonas salmonicida subsp. salmonicida A449 | ||
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| siaP |
|
*
Psychromonas sp. CNPT3 Site: position = -188 score = 4.38034 sequence = AATGGAGCTCAACTCCAAG Site: position = -93 score = 4.69033 sequence = GTTGAAGTAAAGCTCCGTT Gene: PCNPT3_02946: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP) |
|
|
|
|
Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP) |
| siaS |
|
Gene: PCNPT3_02951: TRAP-type transport system, small permease component, N-acetylneuraminate transporter |
|
|
|
|
TRAP-type transport system, small permease component, N-acetylneuraminate transporter |
| siaT |
|
Gene: PCNPT3_02956: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter |
|
|
|
|
TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter |
| CRON 2. | |||||||
| nanP |
|
*
Psychromonas sp. CNPT3 Site: position = -215 score = 5.22575 sequence = ATTGAAGTTTCACTCCAAA Site: position = -157 score = 4.98175 sequence = TTTGGAGTTTAGCTACATA Gene: PCNPT3_02205: Sialic acid transporter |
|
|
|
|
Sialic acid transporter |
| CRON 3. | |||||||
| nanE |
|
*
Psychromonas sp. CNPT3 Site: position = -76 score = 5.4653 sequence = ATTGAAGTTTTACTCCAAA Site: position = -18 score = 5.33901 sequence = TTTGGAGTTTAACTACATA Gene: PCNPT3_00800: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
|
|
|
|
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
| nanK |
|
Gene: PCNPT3_00795: N-acetylmannosamine kinase (EC 2.7.1.60) |
|
|
|
|
N-acetylmannosamine kinase (EC 2.7.1.60) |
| yhcH |
|
Gene: PCNPT3_00790: Uncharacterized protein yhcH |
|
|
|
|
Uncharacterized protein yhcH |
| CRON 4. | |||||||
| nanA |
|
*
Psychromonas sp. CNPT3 Site: position = -39 score = 4.6521 sequence = AACGGAGTTTAATTTCTCT Gene: PCNPT3_00810: N-acetylneuraminate lyase (EC 4.1.3.3) |
|
|
|
|
N-acetylneuraminate lyase (EC 4.1.3.3) |
| CRON 5. | |||||||
| glmU |
Gene: Ping_3204: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
*
Psychromonas sp. CNPT3 Site: position = -89 score = 4.30303 sequence = AGTAAAATTAAACTTTATT Gene: PCNPT3_13193: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
Gene: PE36_15540: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
Gene: AHA_4260: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
Gene: ASA_4348: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
Gene: Tola_0300: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
| CRON 6. | |||||||
| nanM |
|
*
Psychromonas sp. CNPT3 Site: position = -90 score = 4.21253 sequence = AAAGAAATATTTTTTCATT Gene: PCNPT3_09404: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase |
|
|
|
|
Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |