Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SiaR - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Sialic acid utilization
Effector: Glucosamine-6-phosphate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37
Psychromonas sp. CNPT3 10 6
Moritella sp. PE36
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Tolumonas auensis DSM 9187
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
siaP
 
Psychromonas ingrahamii 37
*
Psychromonas sp. CNPT3

Site:
position = -188
score = 4.38034
sequence = AATGGAGCTCAACTCCAAG

Site:
position = -93
score = 4.69033
sequence = GTTGAAGTAAAGCTCCGTT

Gene: PCNPT3_02946: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
siaS
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3

Gene: PCNPT3_02951: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
TRAP-type transport system, small permease component, N-acetylneuraminate transporter
siaT
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3

Gene: PCNPT3_02956: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
 
CRON 2.
nanP
 
Psychromonas ingrahamii 37
*
Psychromonas sp. CNPT3

Site:
position = -215
score = 5.22575
sequence = ATTGAAGTTTCACTCCAAA

Site:
position = -157
score = 4.98175
sequence = TTTGGAGTTTAGCTACATA

Gene: PCNPT3_02205: Sialic acid transporter
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Sialic acid transporter
 
CRON 3.
nanE
 
Psychromonas ingrahamii 37
*
Psychromonas sp. CNPT3

Site:
position = -76
score = 5.4653
sequence = ATTGAAGTTTTACTCCAAA

Site:
position = -18
score = 5.33901
sequence = TTTGGAGTTTAACTACATA

Gene: PCNPT3_00800: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
nanK
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3

Gene: PCNPT3_00795: N-acetylmannosamine kinase (EC 2.7.1.60)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
N-acetylmannosamine kinase (EC 2.7.1.60)
yhcH
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3

Gene: PCNPT3_00790: Uncharacterized protein yhcH
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Uncharacterized protein yhcH
 
CRON 4.
nanA
 
Psychromonas ingrahamii 37
*
Psychromonas sp. CNPT3

Site:
position = -39
score = 4.6521
sequence = AACGGAGTTTAATTTCTCT

Gene: PCNPT3_00810: N-acetylneuraminate lyase (EC 4.1.3.3)
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
N-acetylneuraminate lyase (EC 4.1.3.3)
 
CRON 5.
glmU
 
Psychromonas ingrahamii 37

Gene: Ping_3204: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
*
Psychromonas sp. CNPT3

Site:
position = -89
score = 4.30303
sequence = AGTAAAATTAAACTTTATT

Gene: PCNPT3_13193: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
 
Moritella sp. PE36

Gene: PE36_15540: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_4260: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_4348: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
 
Tolumonas auensis DSM 9187

Gene: Tola_0300: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
 
CRON 6.
nanM
 
Psychromonas ingrahamii 37
*
Psychromonas sp. CNPT3

Site:
position = -90
score = 4.21253
sequence = AAAGAAATATTTTTTCATT

Gene: PCNPT3_09404: Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449
 
Tolumonas auensis DSM 9187
Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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