Regulon of Cobalamin in Bacteroides coprophilus DSM 18228
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Bacteroidaceae |
| Under regulation: | |
| - Genes | 15 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -227
Score: 88.7 Sequence: TTTGTATCGCTTTTC...
Locus tag: BACCOPRO_02553
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: BACCOPRO_02554
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
|
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -272
Score: 92.8 Sequence: TCCTACCTTTGCGAA...
Locus tag: BACCOPRO_03547
Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACCOPRO_03546
Name: null Funciton: Hypothetical protein
Locus tag: BACCOPRO_03545
Name: btuF1 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF1
Locus tag: BACCOPRO_03544
Name: btuC1 Funciton: Vitamin B12 ABC transporter, permease component BtuC1
Locus tag: BACCOPRO_03543
Name: btuD1 Funciton: Putative vitamin B12 ABC transporter, ATP-binding protein |
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btuB1
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Outer membrane vitamin B12 receptor BtuB
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Hypothetical protein
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btuF1
|
Vitamin B12 ABC transporter, B12-binding component BtuF1
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btuC1
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Vitamin B12 ABC transporter, permease component BtuC1
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btuD1
|
Putative vitamin B12 ABC transporter, ATP-binding protein
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Position: -344
Score: 106.3 Sequence: TTTTTGTAATTGGAA...
Locus tag: BACCOPRO_02029
Name: null Funciton: Hypothetical protein
Locus tag: BACCOPRO_02030
Name: null Funciton: Putative cell surface protein
Locus tag: BACCOPRO_02031
Name: null Funciton: Putative cell wall biogenesis protein secretory protein
Locus tag: BACCOPRO_02032
Name: null Funciton: Putative surface layer protein secretory protein
Locus tag: BACCOPRO_02033
Name: null Funciton: Transposase
Locus tag: BACCOPRO_02034
Name: btuB2 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACCOPRO_02035
Name: btuF2 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF1
Locus tag: BACCOPRO_02036
Name: btuC2 Funciton: Vitamin B12 ABC transporter, permease component BtuC1 |
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Hypothetical protein
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Putative cell surface protein
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Putative cell wall biogenesis protein secretory protein
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Putative surface layer protein secretory protein
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Transposase
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btuB2
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Outer membrane vitamin B12 receptor BtuB
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btuF2
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Vitamin B12 ABC transporter, B12-binding component BtuF1
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btuC2
|
Vitamin B12 ABC transporter, permease component BtuC1
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |