Regulon of Cobalamin in Bacteroides vulgatus ATCC 8482

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Bacteroidaceae
Under regulation:
- Genes	21
- Operons	9

Member of regulog collections

By taxonomy - Bacteroidaceae
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -214 Score: 90.7 Sequence: CTTTGCAGCTGTCCG... Locus tag: BVU_1654 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: BVU_1653 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	BVU_1654	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	BVU_1653	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -332 Score: 80.1 Sequence: CTATCTTTGCAACGG... Locus tag: BVU_3108 Name: btuB5 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: BVU_3107 Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
	BVU_3108	btuB5	Outer membrane vitamin B12 receptor BtuB
	BVU_3107	cbiK	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Position: -276 Score: 88.3 Sequence: TTATCTTTGTTCCCG... Locus tag: BVU_3098 Name: nrdA Funciton: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) Locus tag: BVU_3097 Name: nrdB Funciton: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
	BVU_3098	nrdA	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
	BVU_3097	nrdB	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Position: -348 Score: 95.3 Sequence: ACTTTGTCAGTAATA... Locus tag: BVU_3105 Name: nrdD2 Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: BVU_3106 Name: nrdG2 Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	BVU_3105	nrdD2	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	BVU_3106	nrdG2	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: 1874 Score: 97.7 Sequence: TATCTTTGCAGTGCA... Locus tag: BVU_4096 Name: BT1483 Funciton: two-component system sensor histidine kinase
	BVU_4096	BT1483	two-component system sensor histidine kinase
Position: -260 Score: 87.4 Sequence: CTACCTTTGTGCCCG... Locus tag: BVU_3110 Name: btuB4 Funciton: B12-regulated TonB-dependent outer membrane receptor
	BVU_3110	btuB4	B12-regulated TonB-dependent outer membrane receptor
Position: -258 Score: 85.8 Sequence: CTACCTTTGCATCAG... Locus tag: BVU_3092 Name: btuB4 Funciton: B12-regulated TonB-dependent outer membrane receptor Locus tag: BVU_3091 Name: btuF1 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF1
	BVU_3092	btuB4	B12-regulated TonB-dependent outer membrane receptor
	BVU_3091	btuF1	Vitamin B12 ABC transporter, B12-binding component BtuF1
Position: -293 Score: 86.3 Sequence: AACTATCTTTGCCAT... Locus tag: BVU_2057 Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: BVU_2056 Name: null Funciton: Hypothetical protein Locus tag: BVU_2055 Name: btuF1 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF1 Locus tag: BVU_2054 Name: btuC1 Funciton: Vitamin B12 ABC transporter, permease component BtuC1 Locus tag: BVU_2053 Name: btuD1 Funciton: Putative vitamin B12 ABC transporter, ATP-binding protein
	BVU_2057	btuB1	Outer membrane vitamin B12 receptor BtuB
	BVU_2056		Hypothetical protein
	BVU_2055	btuF1	Vitamin B12 ABC transporter, B12-binding component BtuF1
	BVU_2054	btuC1	Vitamin B12 ABC transporter, permease component BtuC1
	BVU_2053	btuD1	Putative vitamin B12 ABC transporter, ATP-binding protein
Position: -488 Score: 101.3 Sequence: ATTATCTTTGCCCCG... Locus tag: BVU_3104 Name: pccC Funciton: Biotin carboxylase of propionyl-CoA carboxylase (EC 6.3.4.14) Locus tag: BVU_3103 Name: pccA Funciton: Biotin carboxyl carrier protein of propionyl-CoA carboxylase Locus tag: BVU_3102 Name: pccB Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) Locus tag: BVU_3101 Name: cbtD Funciton: Predicted cobalt transporter in Bacteroides_Porphyromonas
	BVU_3104	pccC	Biotin carboxylase of propionyl-CoA carboxylase (EC 6.3.4.14)
	BVU_3103	pccA	Biotin carboxyl carrier protein of propionyl-CoA carboxylase
	BVU_3102	pccB	Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
	BVU_3101	cbtD	Predicted cobalt transporter in Bacteroides_Porphyromonas

Export
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Bacteroides vulgatus ATCC 8482

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --