Regulon of Cobalamin in Bacteroides cellulosilyticus DSM 14838
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Bacteroidaceae |
| Under regulation: | |
| - Genes | 26 |
| - Operons | 8 |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -336
Score: 92.1 Sequence: ATATCTTTGCAGCGT...
Locus tag: BACCELL_04591
Name: btuB3 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACCELL_04590
Name: null Funciton: Hypothetical protein
Locus tag: BACCELL_04589
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: BACCELL_04588
Name: btuN Funciton: Optional hypothetical component of the B12 transporter BtuN
Locus tag: BACCELL_04587
Name: btuS Funciton: B12-related chelatase BtuS |
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btuB3
|
Outer membrane vitamin B12 receptor BtuB
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Hypothetical protein
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cbiK
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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btuN
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Optional hypothetical component of the B12 transporter BtuN
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btuS
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B12-related chelatase BtuS
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Position: -348
Score: 73.2 Sequence: TATCTTTGCAATCGG...
Locus tag: BACCELL_04594
Name: btuB5 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACCELL_04593
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
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btuB5
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Outer membrane vitamin B12 receptor BtuB
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cbiK
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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Position: -279
Score: 92.4 Sequence: TTATCTTTGTTCCCG...
Locus tag: BACCELL_04148
Name: nrdA Funciton: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Locus tag: BACCELL_04147
Name: nrdA Funciton: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Locus tag: BACCELL_04146
Name: nrdB Funciton: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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nrdA
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
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nrdA
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
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nrdB
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
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Position: -352
Score: 92 Sequence: ACTTTGTCAGCGATA...
Locus tag: BACCELL_00566
Name: nrdD2 Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: BACCELL_00567
Name: nrdG2 Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD2
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG2
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -494
Score: 90.5 Sequence: ACTATCTTTGCCCCG...
Locus tag: BACCELL_00563
Name: pccC Funciton: Biotin carboxylase of propionyl-CoA carboxylase (EC 6.3.4.14)
Locus tag: BACCELL_00562
Name: pccA Funciton: Biotin carboxyl carrier protein of propionyl-CoA carboxylase
Locus tag: BACCELL_00561
Name: pccB Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
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pccC
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Biotin carboxylase of propionyl-CoA carboxylase (EC 6.3.4.14)
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pccA
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Biotin carboxyl carrier protein of propionyl-CoA carboxylase
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pccB
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Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
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Position: 1589
Score: 108 Sequence: TATCTTTGCGATGCA...
Locus tag: BACCELL_05151
Name: BT1483 Funciton: two-component system sensor histidine kinase |
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BT1483
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two-component system sensor histidine kinase
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Position: -203
Score: 97.1 Sequence: TATCTTTGCCCTTCG...
Locus tag: BACCELL_01030
Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACCELL_01029
Name: null Funciton: Hypothetical protein
Locus tag: BACCELL_01028
Name: btuF1 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF1
Locus tag: BACCELL_01027
Name: btuC1 Funciton: Vitamin B12 ABC transporter, permease component BtuC1
Locus tag: BACCELL_01026
Name: btuD1 Funciton: Putative vitamin B12 ABC transporter, ATP-binding protein |
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btuB1
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Outer membrane vitamin B12 receptor BtuB
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Hypothetical protein
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btuF1
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Vitamin B12 ABC transporter, B12-binding component BtuF1
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btuC1
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Vitamin B12 ABC transporter, permease component BtuC1
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btuD1
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Putative vitamin B12 ABC transporter, ATP-binding protein
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Position: -356
Score: 98.1 Sequence: TATCTTTGCCATTGA...
Locus tag: BACCELL_01617
Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACCELL_01616
Name: null Funciton: Hypothetical protein
Locus tag: BACCELL_01615
Name: null Funciton: Putative cell surface protein
Locus tag: BACCELL_01614
Name: null Funciton: Hypothetical protein
Locus tag: BACCELL_01613
Name: null Funciton: Hypothetical protein |
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btuB1
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Outer membrane vitamin B12 receptor BtuB
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Hypothetical protein
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Putative cell surface protein
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Hypothetical protein
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Hypothetical protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |