Regulon of Cobalamin in Bacteroides ovatus ATCC 8483
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Bacteroidaceae |
| Under regulation: | |
| - Genes | 25 |
| - Operons | 7 |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -350
Score: 89.9 Sequence: ACTTTGCCGCCAACA...
Locus tag: BACOVA_00801
Name: nrdD2 Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: BACOVA_00802
Name: nrdG2 Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD2
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG2
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -227
Score: 86.3 Sequence: TCTTTGTATCTGGTT...
Locus tag: BACOVA_01422
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: BACOVA_01423
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -352
Score: 102.5 Sequence: CTTAACTTTGCACCA...
Locus tag: BACOVA_04709
Name: null Funciton: Hypothetical protein
Locus tag: BACOVA_04708
Name: null Funciton: Putative cell surface protein
Locus tag: BACOVA_04707
Name: null Funciton: Putative cell wall biogenesis protein secretory protein
Locus tag: BACOVA_04706
Name: null Funciton: Putative surface layer protein secretory protein
Locus tag: BACOVA_04705
Name: btuB2 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACOVA_04704
Name: btuF2 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF1
Locus tag: BACOVA_04703
Name: btuC2 Funciton: Vitamin B12 ABC transporter, permease component BtuC1
Locus tag: BACOVA_04702
Name: btuD2 Funciton: Vitamin B12 ABC transporter, ATPase component
Locus tag: BACOVA_04701
Name: null Funciton: Putative membrane protein
Locus tag: BACOVA_04700
Name: null Funciton: Probable integral membrane protein |
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Hypothetical protein
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Putative cell surface protein
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Putative cell wall biogenesis protein secretory protein
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Putative surface layer protein secretory protein
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btuB2
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Outer membrane vitamin B12 receptor BtuB
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btuF2
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Vitamin B12 ABC transporter, B12-binding component BtuF1
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btuC2
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Vitamin B12 ABC transporter, permease component BtuC1
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btuD2
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Vitamin B12 ABC transporter, ATPase component
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Putative membrane protein
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Probable integral membrane protein
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Position: -316
Score: 90.5 Sequence: TATCTTTGCCCCCCG...
Locus tag: BACOVA_01465
Name: pccC Funciton: Biotin carboxylase of propionyl-CoA carboxylase (EC 6.3.4.14)
Locus tag: BACOVA_01464
Name: pccA Funciton: Biotin carboxyl carrier protein of propionyl-CoA carboxylase
Locus tag: BACOVA_01463
Name: pccB Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
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pccC
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Biotin carboxylase of propionyl-CoA carboxylase (EC 6.3.4.14)
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pccA
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Biotin carboxyl carrier protein of propionyl-CoA carboxylase
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pccB
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Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
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Position: -425
Score: 93.6 Sequence: CTATCTTTGCCCCTG...
Locus tag: BACOVA_03267
Name: cbtD Funciton: Predicted cobalt transporter in Bacteroides_Porphyromonas |
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cbtD
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Predicted cobalt transporter in Bacteroides_Porphyromonas
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Position: -382
Score: 97 Sequence: TATCTTTGTCGCGCA...
Locus tag: BACOVA_04219
Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACOVA_04220
Name: null Funciton: Hypothetical protein
Locus tag: BACOVA_04221
Name: null Funciton: Hypothetical protein |
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btuB1
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Outer membrane vitamin B12 receptor BtuB
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Hypothetical protein
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Hypothetical protein
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Position: -536
Score: 85.5 Sequence: TCTAACTTTGTGCCA...
Locus tag: BACOVA_03265
Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: BACOVA_03264
Name: null Funciton: Hypothetical protein
Locus tag: BACOVA_03263
Name: null Funciton: Hypothetical protein
Locus tag: BACOVA_03262
Name: null Funciton: Putative cell surface protein |
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btuB1
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Outer membrane vitamin B12 receptor BtuB
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Hypothetical protein
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Hypothetical protein
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Putative cell surface protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |