Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Escherichia coli str. K-12 substr. MG1655

Properties
Regulator type: Transcription factor
TF locus tag: b2193
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 95
- Operons 26
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -158
Score: 4.3
Sequence: TTATCCTAAAGGGGTA
Locus tag: b1224
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: b1225
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: b1226
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: b1227
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
b1224
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
b1225
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
b1226
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
b1227
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -352
Score: 4.9
Sequence: TACCCACAAATGGGTA
Locus tag: b4123
Name: dcuB
Funciton: C4-dicarboxylate transporter
Locus tag: b4122
Name: fumB
Funciton: Fumarate hydratase class I, (EC 4.2.1.2)
b4123
dcuB
C4-dicarboxylate transporter
b4122
fumB
Fumarate hydratase class I, (EC 4.2.1.2)
Position: -141
Score: 4.3
Sequence: TACCGCTATTGAGGTA
Locus tag: b1474
Name: fdnG
Funciton: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Locus tag: b1475
Name: fdnH
Funciton: Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
Locus tag: b1476
Name: fdnI
Funciton: Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
b1474
fdnG
Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
b1475
fdnH
Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
b1476
fdnI
Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: b2464
Name: talA
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: b2465
Name: tktB
Funciton: Transketolase (EC 2.2.1.1)
b2464
talA
Transaldolase (EC 2.2.1.2)
b2465
tktB
Transketolase (EC 2.2.1.1)
Position: -55
Score: 4.5
Sequence: TACTCCAATGTAGGTA
Locus tag: b1256
Name: ompW
Funciton: Outer membrane protein W precursor
b1256
ompW
Outer membrane protein W precursor
Position: -180
Score: 3.4
Sequence: TACCGAACAATAATTA
Locus tag: b0894
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: b0895
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: b0896
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
b0894
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
b0895
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
b0896
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Position: -215
Score: 4.7
Sequence: TACCCAGAAGTGAGTA
Locus tag: b1241
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
b1241
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -92
Score: 4.7
Sequence: TAACCCAAAATGGGTA
Locus tag: b1587
Name: ynfE
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: b1588
Name: ynfF
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: b1589
Name: ynfG
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: b1590
Name: ynfH
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: b1591
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
b1587
ynfE
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
b1588
ynfF
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
b1589
ynfG
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
b1590
ynfH
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
b1591
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
Position: -365
Score: 4.6
Sequence: TAACTCATAATGGGTA
Locus tag: b0041
Name: fixA
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: b0042
Name: fixB
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: b0043
Name: fixC
Funciton: Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
Locus tag: b0044
Name: fixX
Funciton: Predicted ferredoxin involved in anaerobic carnitine metabolism
b0041
fixA
Flavoprotein involved in anaerobic carnitine metabolism
b0042
fixB
Flavoprotein involved in anaerobic carnitine metabolism
b0043
fixC
Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
b0044
fixX
Predicted ferredoxin involved in anaerobic carnitine metabolism
Position: -228
Score: 4
Sequence: TTACCCATAGTGAGTA
Position: -118
Score: 3.8
Sequence: TAACTCTTTCCGGGTA
Locus tag: b1222
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: b1221
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
b1222
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
b1221
narL
Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -163
Score: 4.5
Sequence: TAACCATAAAGGATTA
Locus tag: b1674
Name: ydhY
Funciton: Predicted oxidoreductase, FeS cluster subunit
Locus tag: b1673
Name: ydhV
Funciton: Predicted oxidoreductase subunit
Locus tag: b1672
Name: ydhW
Funciton: Predicted oxidoreductase subunit
Locus tag: b1671
Name: ydhX
Funciton: Predicted oxidoreductase, FeS cluster subunit
Locus tag: b1670
Name: ydhU
Funciton: Predicted oxidoreductase, cytochrome b subunit
Locus tag: b1669
Name: ydhT
Funciton: Predicted oxidoreductase subunit
b1674
ydhY
Predicted oxidoreductase, FeS cluster subunit
b1673
ydhV
Predicted oxidoreductase subunit
b1672
ydhW
Predicted oxidoreductase subunit
b1671
ydhX
Predicted oxidoreductase, FeS cluster subunit
b1670
ydhU
Predicted oxidoreductase, cytochrome b subunit
b1669
ydhT
Predicted oxidoreductase subunit
Position: -90
Score: 3.9
Sequence: TACCTCACAAAGGTTA
Locus tag: b0763
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: b0764
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: b0765
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
b0763
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
b0764
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
b0765
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -129
Score: 4.6
Sequence: TACCCCGATCGGGGTA
Locus tag: b2208
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: b2207
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: b2206
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: b2205
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: b2204
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: b2203
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: b2202
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: b2201
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: b2200
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: b2199
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: b2198
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: b2197
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: b2196
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: b2195
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: b2194
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
b2208
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
b2207
napD
Periplasmic nitrate reductase component NapD
b2206
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
b2205
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
b2204
napH
Periplasmic nitrate reductase, polyferredoxin NapH
b2203
napB
Nitrate reductase cytochrome c550-type subunit
b2202
napC
Cytochrome c-type protein NapC
b2201
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
b2200
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
b2199
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
b2198
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
b2197
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
b2196
ccmF
Cytochrome c heme lyase, subunit CcmF
b2195
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
b2194
ccmH
Cytochrome c heme lyase, subunit CcmH
Position: -236
Score: 4.1
Sequence: TACCCGGAAAGAGTTA
Locus tag: b1223
Name: narK
Funciton: Nitrate/nitrite antiporter
b1223
narK
Nitrate/nitrite antiporter
Position: -31
Score: 4.6
Sequence: TACCTCGAAGGGAGCA
Locus tag: b3739
Name: atpI
Funciton: ATP synthase maturation
Locus tag: b3738
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: b3737
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: b3736
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: b3735
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: b3734
Name: atpA
Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: b3733
Name: atpG
Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: b3732
Name: atpD
Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: b3731
Name: atpC
Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
b3739
atpI
ATP synthase maturation
b3738
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
b3737
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
b3736
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
b3735
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
b3734
atpA
ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
b3733
atpG
ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
b3732
atpD
ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
b3731
atpC
ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
Position: -143
Score: 4.5
Sequence: TACCTCTCTGGCGGTA
Locus tag: b0873
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: b0872
Name: hcr
Funciton: NADH oxidoreductase hcr (EC 1.-.-.-)
b0873
hcp
Hydroxylamine reductase (EC 1.7.-.-)
b0872
hcr
NADH oxidoreductase hcr (EC 1.-.-.-)
Position: -104
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: b2295
Name: yfbV
Funciton: Predicted membrane protein
Locus tag: b2294
Name: yfbU
Funciton: Conserved hypothetical protein
Locus tag: b2293
Name: yfbT
Funciton: Predicted phosphatase
Locus tag: b2292
Name: yfbS
Funciton: Predicted transport protein
b2295
yfbV
Predicted membrane protein
b2294
yfbU
Conserved hypothetical protein
b2293
yfbT
Predicted phosphatase
b2292
yfbS
Predicted transport protein
Position: -79
Score: 3.7
Sequence: TGCTACGTAAGGGTTA
Locus tag: b4209
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
b4209
dnrN
Nitric oxide-dependent regulator DnrN
Position: -122
Score: 4.4
Sequence: TACCCATTATGAGTTA
Locus tag: b0040
Name: caiT
Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: b0039
Name: caiA
Funciton: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: b0038
Name: caiB
Funciton: Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
Locus tag: b0037
Name: caiC
Funciton: Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
Locus tag: b0036
Name: caiD
Funciton: Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
Locus tag: b0035
Name: caiE
Funciton: Carnitine operon protein CaiE
b0040
caiT
L-carnitine/gamma-butyrobetaine antiporter
b0039
caiA
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
b0038
caiB
Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
b0037
caiC
Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
b0036
caiD
Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
b0035
caiE
Carnitine operon protein CaiE
Position: -112
Score: 4.6
Sequence: TACCTCCAACGGAGTA
Locus tag: b3210
Name: arcB
Funciton: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
b3210
arcB
Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
Position: -118
Score: 4.6
Sequence: TACTCATTAATGGGCA
Locus tag: b2710
Name: norV
Funciton: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
Locus tag: b2711
Name: norW
Funciton: Nitric oxide reductase reductase, FlRd-NAD dependent (EC 1.18.1.-)
b2710
norV
Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-)
b2711
norW
Nitric oxide reductase reductase, FlRd-NAD dependent (EC 1.18.1.-)
Position: -175
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: b4070
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: b4071
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: b4072
Name: nrfC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: b4073
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: b4074
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: b4075
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
Locus tag: b4076
Name: nrfG
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
b4070
nrfA
Nitrite reductase, cytochrome c(552)
b4071
nrfB
Cytochrome c-type protein NrfB precursor
b4072
nrfC
Nitrite reductase, Fe-S center subunit
b4073
nrfD
Nitrite reductase, NrfD component
b4074
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
b4075
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
b4076
nrfG
Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
Position: -101
Score: 5.1
Sequence: TACCCATTAAGGAGTA
Locus tag: b3365
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: b3366
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: b3367
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: b3368
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
b3365
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
b3366
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
b3367
nirC
Nitrite transporter, FNT family
b3368
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -91
Score: 4
Sequence: TACATAAAATGGGGTA
Locus tag: b2193
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
b2193
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -101
Score: 4.7
Sequence: TACCTATAAAGGAGCA
Locus tag: b4154
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: b4153
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Locus tag: b4152
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: b4151
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
b4154
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
b4153
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
b4152
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
b4151
frdD
Fumarate reductase subunit D (EC 1.3.5.4)
Position: -97
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: b1797
Name: yeaR
Funciton: Conserved hypothetical protein
Locus tag: b1796
Name: yoaG
Funciton: Conserved hypothetical protein
b1797
yeaR
Conserved hypothetical protein
b1796
yoaG
Conserved hypothetical protein
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