Regulon of DosR in Rhodococcus sp. RHA1
| Regulator type: | Transcription factor |
| TF locus tag: | RHA1_ro00048, RHA1_ro02256 |
| Regulator family: | LuxR |
| Regulation mode: | activator |
| Biological process: | Dormancy |
| Effector: | Oxygen; Carbon monoxide; Nitric oxide |
| Regulog: | DosR - Actinomycetales |
| Statistics of regulated genes: | |
| - Genes | 35 |
| - Operons | 18 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By TF family - LuxR
- By effector - Oxygen
- By effector - Carbon monoxide
- By effector - Nitric oxide
- By pathway - Dormancy
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -90
Score: 4.7 Sequence: TAGGGCCGATGGTCACTG
Position: -52
Score: 4.3 Sequence: TCGGGCCGGAAGACCCTA
Locus tag: RHA1_ro00030
Name: null Funciton: ABC transporter, ATP-binding protein
Locus tag: RHA1_ro00029
Name: null Funciton: probable ABC transporter, permease component
Locus tag: RHA1_ro00028
Name: usp Funciton: universal stress protein |
|||
|
ABC transporter, ATP-binding protein
|
|||
|
probable ABC transporter, permease component
|
|||
|
usp
|
universal stress protein
|
||
|
Position: -127
Score: 4.3 Sequence: CAGGGCATTTGGACCCTT
Position: -68
Score: 4.3 Sequence: TGAGGTCCTAGGACCCTT
Locus tag: RHA1_ro00059
Name: null Funciton: probable IMP dehydrogenase
Locus tag: RHA1_ro00060
Name: null Funciton: hypothetical protein
Locus tag: RHA1_ro00061
Name: Rv1996 Funciton: universal stress protein |
|||
|
probable IMP dehydrogenase
|
|||
|
hypothetical protein
|
|||
|
Rv1996
|
universal stress protein
|
||
|
Position: -137
Score: 4.3 Sequence: CGATGACCTTGGGCCCTA
Locus tag: RHA1_ro00025
Name: null Funciton: hypothetical protein
Locus tag: RHA1_ro00024
Name: DGAT Funciton: wax-dgat acyltransferase
Locus tag: RHA1_ro00023
Name: DGAT Funciton: wax-dgat acyltransferase |
|||
|
hypothetical protein
|
|||
|
DGAT
|
wax-dgat acyltransferase
|
||
|
DGAT
|
wax-dgat acyltransferase
|
||
|
Position: -96
Score: 3.8 Sequence: AGGGGCACGAAGTCCCGA
Locus tag: RHA1_ro03145
Name: null Funciton: hypothetical protein
Locus tag: RHA1_ro03146
Name: null Funciton: metal cation transporting ATPase, P-type ATPase superfamily |
|||
|
hypothetical protein
|
|||
|
metal cation transporting ATPase, P-type ATPase superfamily
|
|||
|
Position: -316
Score: 5.1 Sequence: TAGGGACTTTCGGCCCTA
Locus tag: RHA1_ro05356
Name: DGAT Funciton: wax-dgat acyltransferase |
|||
|
DGAT
|
wax-dgat acyltransferase
|
||
|
Position: -188
Score: 4.3 Sequence: CCGGGACTTTCGGCCTCG
Locus tag: RHA1_ro08645
Name: DGAT Funciton: wax-dgat acyltransferase |
|||
|
DGAT
|
wax-dgat acyltransferase
|
||
|
Position: -489
Score: 4.4 Sequence: TGGTGACTTTCGGCCCTG
Locus tag: RHA1_ro00048
Name: dosR Funciton: two component transcriptional regulator, DosR
Locus tag: RHA1_ro00049
Name: dosS Funciton: two-component sensor histidine kinase, DosS |
|||
|
dosR
|
two component transcriptional regulator, DosR
|
||
|
dosS
|
two-component sensor histidine kinase, DosS
|
||
|
Position: -110
Score: 4.3 Sequence: CGATGACCTACGGCCCTA
Locus tag: RHA1_ro00027
Name: acg Funciton: nitroreductase
Locus tag: RHA1_ro00026
Name: Rv1996 Funciton: universal stress protein |
|||
|
acg
|
nitroreductase
|
||
|
Rv1996
|
universal stress protein
|
||
|
Position: -89
Score: 4.4 Sequence: TCGGGACCTTCGACCCAA
Locus tag: RHA1_ro02257
Name: Rv3131 Funciton: nitroreductase
Locus tag: RHA1_ro02258
Name: null Funciton: putative fatty acid desaturase |
|||
|
Rv3131
|
nitroreductase
|
||
|
putative fatty acid desaturase
|
|||
|
Position: -73
Score: 4.8 Sequence: TGGGGACTTAAGTCCCTC
Locus tag: RHA1_ro02263
Name: usp Funciton: universal stress protein
Locus tag: RHA1_ro02262
Name: null Funciton: probable oxidoreductase
Locus tag: RHA1_ro02261
Name: usp Funciton: universal stress protein |
|||
|
usp
|
universal stress protein
|
||
|
probable oxidoreductase
|
|||
|
usp
|
universal stress protein
|
||
|
Position: -148
Score: 4.3 Sequence: CCGTGACGTTGGTCCCTT
Locus tag: RHA1_ro08739
Name: Mmcs_1080 Funciton: hypothetical protein |
|||
|
Mmcs_1080
|
hypothetical protein
|
||
|
Position: -79
Score: 4.3 Sequence: CGAGGACCAAAGGCTCTG
Locus tag: RHA1_ro00054
Name: Mmcs_1106 Funciton: GCN5-related N-acetyltransferase
Locus tag: RHA1_ro00055
Name: Rv2004c Funciton: hypothetical protein
Locus tag: RHA1_ro00056
Name: pfkB Funciton: probable phosphofructokinase |
|||
|
Mmcs_1106
|
GCN5-related N-acetyltransferase
|
||
|
Rv2004c
|
hypothetical protein
|
||
|
pfkB
|
probable phosphofructokinase
|
||
|
Position: -123
Score: 4.3 Sequence: TAGGGTCTTCCGGCCCGA
Position: -85
Score: 4.7 Sequence: CAGTGACCATCGGCCCTA
Locus tag: RHA1_ro00031
Name: nitroreductase Funciton: nitroreductase |
|||
|
nitroreductase
|
nitroreductase
|
||
|
Position: -115
Score: 4.3 Sequence: CAGAGCCTTTGGTCCTCG
Locus tag: RHA1_ro00053
Name: null Funciton: hypothetical protein
Locus tag: RHA1_ro00052
Name: MMAR_3503 Funciton: metal cation transporter p-type ATPase
Locus tag: RHA1_ro00051
Name: null Funciton: cation transporting ATPase |
|||
|
hypothetical protein
|
|||
|
MMAR_3503
|
metal cation transporter p-type ATPase
|
||
|
cation transporting ATPase
|
|||
|
Position: -176
Score: 4.3 Sequence: AAGGGTCCTAGGACCTCA
Position: -117
Score: 4.3 Sequence: AAGGGTCCAAATGCCCTG
Locus tag: RHA1_ro00058
Name: null Funciton: 3-oxoacyl-(acyl-carrier protein) synthase
Locus tag: RHA1_ro00057
Name: null Funciton: 3-oxoacyl-[acyl-carrier-protein] synthase III |
|||
|
3-oxoacyl-(acyl-carrier protein) synthase
|
|||
|
3-oxoacyl-[acyl-carrier-protein] synthase III
|
|||
|
Position: -101
Score: 4.4 Sequence: TTGGGTCGAAGGTCCCGA
Locus tag: RHA1_ro02256
Name: dosR Funciton: two component transcriptional regulator, DosR |
|||
|
dosR
|
two component transcriptional regulator, DosR
|
||
|
Position: -69
Score: 4.1 Sequence: TAGGGTCTACCGTCACTT
Locus tag: RHA1_ro00042
Name: RHA1_ro00042 Funciton: universal stress protein |
|||
|
RHA1_ro00042
|
universal stress protein
|
||
|
Position: -92
Score: 3.9 Sequence: TGGGGACCTTCTCCCCTA
Locus tag: RHA1_ro00050
Name: usp Funciton: universal stress protein |
|||
|
usp
|
universal stress protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |