Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TnrA in Bacillus pumilus SAFR-032

Properties
Regulator type: Transcription factor
TF locus tag: BPUM_1230
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 49
- Operons 23
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -34
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: BPUM_1042
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: BPUM_1043
Name: argJ
Funciton: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Locus tag: BPUM_1044
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: BPUM_1045
Name: argD
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11)
Locus tag: BPUM_1046
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BPUM_1047
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BPUM_1048
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
BPUM_1042
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
BPUM_1043
argJ
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
BPUM_1044
argB
Acetylglutamate kinase (EC 2.7.2.8)
BPUM_1045
argD
Acetylornithine aminotransferase (EC 2.6.1.11)
BPUM_1046
carA
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
BPUM_1047
carB
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
BPUM_1048
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
Position: -312
Score: 4.9
Sequence: TGTGAAAAAATATGACA
Locus tag: BPUM_2473
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
BPUM_2473
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -93
Score: 3.8
Sequence: TGTTAAAAATGAATACA
Locus tag: BPUM_2382
Name: glnQ
Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: BPUM_2383
Name: glnH
Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Locus tag: BPUM_2384
Name: glnM
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Locus tag: BPUM_2385
Name: glnP
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
BPUM_2382
glnQ
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
BPUM_2383
glnH
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
BPUM_2384
glnM
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
BPUM_2385
glnP
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Position: -82
Score: 4.4
Sequence: TGTTAATATTCCTAACA
Position: -59
Score: 5.1
Sequence: TGACATATAATATAACA
Position: -54
Score: 4.2
Sequence: TATAATATAACATGACA
Locus tag: BPUM_1636
Name: glnR
Funciton: Transcriptional regulator of nitrogen excess response, MerR family
Locus tag: BPUM_1637
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
BPUM_1636
glnR
Transcriptional regulator of nitrogen excess response, MerR family
BPUM_1637
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -54
Score: 4.6
Sequence: TGTGAGATTTTATTACT
Locus tag: BPUM_1814
Name: gltA
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: BPUM_1813
Name: gltB
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
BPUM_1814
gltA
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
BPUM_1813
gltB
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -116
Score: 4.6
Sequence: AGTAATAAAATCTCACA
Locus tag: BPUM_1815
Name: gltC
Funciton: Transcriptional regulator of glutamate biosynthesis (LysR family)
BPUM_1815
gltC
Transcriptional regulator of glutamate biosynthesis (LysR family)
Position: -162
Score: 5
Sequence: GGTCAGATTTTATGACA
Locus tag: BPUM_1922
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
BPUM_1922
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
Position: -106
Score: 4.9
Sequence: TGAAAGATTATGTTACA
Locus tag: BPUM_3259
Name: capB
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3258
Name: capC
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3257
Name: capA
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3256
Name: capE
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3255
Name: pgdS
Funciton: Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)
BPUM_3259
capB
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
BPUM_3258
capC
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
BPUM_3257
capA
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
BPUM_3256
capE
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
BPUM_3255
pgdS
Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)
Position: -142
Score: 4.4
Sequence: TGTCATGTTAGTTGACA
Locus tag: BPUM_2903
Name: pucR
Funciton: Transcriptional regulator of the purine degradation operon, PucR family
BPUM_2903
pucR
Transcriptional regulator of the purine degradation operon, PucR family
Position: -134
Score: 5.5
Sequence: TGTCATAAAATCTGACA
Locus tag: BPUM_2261
Name: yqzL
Funciton: Hypothetical protein
Locus tag: BPUM_2260
Name: recO
Funciton: DNA recombination and repair protein RecO
BPUM_2261
yqzL
Hypothetical protein
BPUM_2260
recO
DNA recombination and repair protein RecO
Position: -121
Score: 4
Sequence: TGTCAACTTTCCTTCCA
Position: -80
Score: 5.5
Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_1230
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
BPUM_1230
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family
Position: -73
Score: 3.8
Sequence: TGAAAGAATTTATTTAA
Locus tag: BPUM_0344
Name: yclG
Funciton: Pectate lyase family protein
BPUM_0344
yclG
Pectate lyase family protein
Position: -113
Score: 5.5
Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_0379
Name: lamB
Funciton: Lactam utilization protein LamB
Locus tag: BPUM_0380
Name: ycsG
Funciton: Permease (transport protein)
Locus tag: BPUM_0381
Name: ycsI
Funciton: Hypothetical protein
Locus tag: BPUM_0382
Name: kipI
Funciton: Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
Locus tag: BPUM_0383
Name: kipA
Funciton: Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
Locus tag: BPUM_0384
Name: kipR
Funciton: Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family
BPUM_0379
lamB
Lactam utilization protein LamB
BPUM_0380
ycsG
Permease (transport protein)
BPUM_0381
ycsI
Hypothetical protein
BPUM_0382
kipI
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
BPUM_0383
kipA
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
BPUM_0384
kipR
Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family
Position: -70
Score: 4.5
Sequence: TGAGATAAAATCTGCCA
Locus tag: BPUM_0239
Name: ydaB
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
BPUM_0239
ydaB
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -123
Score: 5.5
Sequence: TGTTAGAAAATATAACA
Position: -82
Score: 4
Sequence: TGGAAGGAAAGTTGACA
Locus tag: BPUM_1231
Name: ykzB
Funciton: Hypothetical protein
Locus tag: BPUM_1232
Name: ykoL
Funciton: Hypothetical protein
BPUM_1231
ykzB
Hypothetical protein
BPUM_1232
ykoL
Hypothetical protein
Position: -59
Score: 4.9
Sequence: TGTGATCTAATCTGACA
Position: 1
Score: 4
Sequence: TGCAAGGAAATTTGACA
Locus tag: BPUM_1877
Name: yhjC
Funciton: Hypothetical protein
Locus tag: BPUM_1878
Name: yodF
Funciton: Na+/solute symporter
BPUM_1877
yhjC
Hypothetical protein
BPUM_1878
yodF
Na+/solute symporter
Position: -64
Score: 4.3
Sequence: TGTTCGTTTATGTGACA
Locus tag: BPUM_3242
Name: ysnE
Funciton: GNAT family acetyltransferase
Locus tag: BPUM_3241
Name: null
Funciton: Sugar ABC superfamily ATP binding cassette transporter, binding protein
BPUM_3242
ysnE
GNAT family acetyltransferase
BPUM_3241
Sugar ABC superfamily ATP binding cassette transporter, binding protein
Position: 20
Score: 4.5
Sequence: TGACAGATTTTCTTACT
Locus tag: BPUM_2871
Name: yuiA
Funciton: Uncharacterized conserved protein contain two CXXC motifs
Locus tag: BPUM_2870
Name: yuiB
Funciton: Hypothetical protein
Locus tag: BPUM_2869
Name: yuiC
Funciton: Hypothetical protein
BPUM_2871
yuiA
Uncharacterized conserved protein contain two CXXC motifs
BPUM_2870
yuiB
Hypothetical protein
BPUM_2869
yuiC
Hypothetical protein
Position: -221
Score: 3.4
Sequence: TGTGAAAACAAATAAAA
Position: -159
Score: 3.8
Sequence: TGGAAGGTAAAATGACC
Locus tag: BPUM_3198
Name: degU
Funciton: Transcriptional regulator essential for degradative enzyme expression and competence regulation, OmpR family
BPUM_3198
degU
Transcriptional regulator essential for degradative enzyme expression and competence regulation, OmpR family
Position: -89
Score: 3.4
Sequence: TTATGTAATAACTTACA
Locus tag: BPUM_1615
Name: rapJ
Funciton: Response regulator aspartate phosphatase I (EC 3.1.-.-)
BPUM_1615
rapJ
Response regulator aspartate phosphatase I (EC 3.1.-.-)
Position: -183
Score: 3.8
Sequence: TTAAATAAATTCTTTCA
Position: -141
Score: 3.7
Sequence: TGAAAGAATTTTTCATA
Locus tag: BPUM_0343
Name: yclF
Funciton: Di-tripeptide-proton ABC symporter
BPUM_0343
yclF
Di-tripeptide-proton ABC symporter
Position: -82
Score: 4.1
Sequence: TGAGAGATTTTCTATCG
Locus tag: BPUM_1193
Name: ykgA
Funciton: Arginine deiminase (EC 3.5.3.6)
BPUM_1193
ykgA
Arginine deiminase (EC 3.5.3.6)
Position: -121
Score: 5
Sequence: TGTAAGATATTCTTTCA
Locus tag: BPUM_3499
Name: ywoF
Funciton: Pectin lyase like protein
BPUM_3499
ywoF
Pectin lyase like protein
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