Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TnrA in Bacillus licheniformis DSM 13

Properties
Regulator type: Transcription factor
TF locus tag: BLi01490
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 64
- Operons 31
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -87
Score: 4.7
Sequence: TGTTAGTAAAGCTTACA
Locus tag: BLi00365
Name: nasA
Funciton: Nitrate/nitrite transporter
BLi00365
nasA
Nitrate/nitrite transporter
Position: -51
Score: 4.8
Sequence: TGTTAGAAAACTTAACA
Locus tag: BLi02069
Name: alsT
Funciton: Sodium/alanine symporter family protein
BLi02069
alsT
Sodium/alanine symporter family protein
Position: -154
Score: 4.6
Sequence: TGATAGAAAATGTGACG
Position: -39
Score: 4.8
Sequence: TGTTAAAAAATTTAACA
Locus tag: BLi03438
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
BLi03438
arcD
Arginine/ornithine antiporter ArcD
Position: -40
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: BLi01206
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: BLi01207
Name: argJ
Funciton: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Locus tag: BLi01208
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: BLi01209
Name: argD
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11)
Locus tag: BLi01210
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BLi01211
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BLi01212
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
BLi01206
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
BLi01207
argJ
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
BLi01208
argB
Acetylglutamate kinase (EC 2.7.2.8)
BLi01209
argD
Acetylornithine aminotransferase (EC 2.6.1.11)
BLi01210
carA
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
BLi01211
carB
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
BLi01212
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
Position: -383
Score: 4.3
Sequence: TGGCAAAAAATCTAACC
Position: -339
Score: 4.5
Sequence: CGGGATAAAATCTAACA
Locus tag: BLi02962
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
BLi02962
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -81
Score: 4.2
Sequence: TGTAAAGAATCCTTACA
Position: -58
Score: 5
Sequence: TGACACATTATATAACA
Locus tag: BLi01992
Name: glnR
Funciton: Transcriptional regulator of nitrogen excess response, MerR family
Locus tag: BLi01993
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
BLi01992
glnR
Transcriptional regulator of nitrogen excess response, MerR family
BLi01993
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -54
Score: 4.9
Sequence: TGTAAGATTTTATGACC
Locus tag: BLi02162
Name: gltA
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: BLi02161
Name: gltB
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
BLi02162
gltA
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
BLi02161
gltB
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -111
Score: 4.9
Sequence: GGTCATAAAATCTTACA
Locus tag: BLi02163
Name: gltC
Funciton: Transcriptional regulator of glutamate biosynthesis (LysR family)
BLi02163
gltC
Transcriptional regulator of glutamate biosynthesis (LysR family)
Position: -248
Score: 4.5
Sequence: TGTAATAAAATATCACT
Locus tag: BLi02324
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
BLi02324
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
Position: -147
Score: 4.8
Sequence: TGGAATATAACCTGACA
Locus tag: BLi04348
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: BLi04349
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: BLi04350
Name: nagR
Funciton: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
Locus tag: BLi04351
Name: null
Funciton: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Locus tag: BLi04352
Name: nagP
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
BLi04348
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
BLi04349
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
BLi04350
nagR
Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
BLi04351
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
BLi04352
nagP
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -87
Score: 5
Sequence: TGTCAGGAAATGTAACA
Locus tag: BLi00482
Name: nasB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: BLi00483
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: BLi00484
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: BLi00485
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: BLi00486
Name: nasF
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
BLi00482
nasB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
BLi00483
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
BLi00484
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
BLi00485
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
BLi00486
nasF
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Position: -103
Score: 5.2
Sequence: TGTAAGGAAATCTGACA
Locus tag: BLi03888
Name: nrgA
Funciton: Ammonium transporter
Locus tag: BLi03889
Name: nrgB
Funciton: Nitrogen regulatory protein P-II
BLi03888
nrgA
Ammonium transporter
BLi03889
nrgB
Nitrogen regulatory protein P-II
Position: -249
Score: 4.9
Sequence: TGGCAGAAAACCTGACA
Locus tag: BLi01232
Name: oppA
Funciton: Oligopeptide ABC transporter (binding lipoprotein)
Locus tag: BLi01233
Name: oppB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: BLi01234
Name: oppC
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: BLi01235
Name: oppD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: BLi01236
Name: oppF
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
BLi01232
oppA
Oligopeptide ABC transporter (binding lipoprotein)
BLi01233
oppB
Oligopeptide ABC transporter (permease)
BLi01234
oppC
Oligopeptide ABC transporter (permease)
BLi01235
oppD
Oligopeptide ABC transporter (ATP-binding protein)
BLi01236
oppF
Oligopeptide ABC transporter (ATP-binding protein)
Position: -114
Score: 4.6
Sequence: TGTCATAAAATTTGAAA
Locus tag: BLi01404
Name: pel
Funciton: Pectate lyase precursor (EC 4.2.2.2)
BLi01404
pel
Pectate lyase precursor (EC 4.2.2.2)
Position: -264
Score: 4.1
Sequence: GGGAATAAAAACTGACA
Locus tag: BLi03835
Name: pgdS
Funciton: Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)
BLi03835
pgdS
Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)
Position: -43
Score: 4.6
Sequence: TGTAAAGAAATATAACA
Locus tag: BLi03435
Name: pucF
Funciton: Allantoate amidohydrolase (EC 3.5.3.9)
Locus tag: BLi03434
Name: pucG
Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
BLi03435
pucF
Allantoate amidohydrolase (EC 3.5.3.9)
BLi03434
pucG
Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
Position: -138
Score: 4.6
Sequence: TGTTATATTTCTTTACA
Locus tag: BLi03436
Name: pucR
Funciton: Transcriptional regulator of the purine degradation operon, PucR family
BLi03436
pucR
Transcriptional regulator of the purine degradation operon, PucR family
Position: -166
Score: 4.1
Sequence: TGGAATGTATTTTCACA
Locus tag: BLi02719
Name: recO
Funciton: DNA recombination and repair protein RecO
BLi02719
recO
DNA recombination and repair protein RecO
Position: -124
Score: 3.8
Sequence: TGTAAACTTTTCTTCCG
Position: -81
Score: 5.6
Sequence: TGTTAGATTTTCTGACA
Locus tag: BLi01490
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
BLi01490
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family
Position: 1
Score: 3.9
Sequence: TGAAAGATTTTTTAATA
Locus tag: BLi00450
Name: null
Funciton: Hypothetical protein
Locus tag: BLi00451
Name: yclG
Funciton: Pectate lyase family protein
BLi00450
Hypothetical protein
BLi00451
yclG
Pectate lyase family protein
Position: -155
Score: 4.6
Sequence: TGTGAGGTTTCCTAACA
Locus tag: BLi00498
Name: lamB
Funciton: Lactam utilization protein LamB
Locus tag: BLi00499
Name: ycsG
Funciton: Permease (transport protein)
Locus tag: BLi00500
Name: ycsI
Funciton: Hypothetical protein
Locus tag: BLi00501
Name: kipI
Funciton: Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
Locus tag: BLi00502
Name: kipA
Funciton: Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
Locus tag: BLi00503
Name: kipR
Funciton: Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family
BLi00498
lamB
Lactam utilization protein LamB
BLi00499
ycsG
Permease (transport protein)
BLi00500
ycsI
Hypothetical protein
BLi00501
kipI
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
BLi00502
kipA
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
BLi00503
kipR
Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family
Position: 3
Score: 4.3
Sequence: CGTCACATAATCTCACC
Locus tag: BLi00300
Name: ydaB
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
BLi00300
ydaB
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -62
Score: 4.9
Sequence: TGTGATTAAATCTGACA
Locus tag: BLi02277
Name: yhjC
Funciton: Hypothetical protein
Locus tag: BLi02278
Name: yodF
Funciton: Na+/solute symporter
BLi02277
yhjC
Hypothetical protein
BLi02278
yodF
Na+/solute symporter
Position: -66
Score: 4.8
Sequence: TGTCATATTATATCACG
Locus tag: BLi03102
Name: braB
Funciton: Branched-chain amino acid transport system carrier protein
BLi03102
braB
Branched-chain amino acid transport system carrier protein
Position: -76
Score: 4.9
Sequence: TGTTATATTTTCTGACT
Locus tag: BLi03391
Name: yuiA
Funciton: Uncharacterized conserved protein contain two CXXC motifs
Locus tag: BLi03390
Name: yuiB
Funciton: Hypothetical protein
Locus tag: BLi03389
Name: yuiC
Funciton: Hypothetical protein
BLi03391
yuiA
Uncharacterized conserved protein contain two CXXC motifs
BLi03390
yuiB
Hypothetical protein
BLi03389
yuiC
Hypothetical protein
Position: -167
Score: 3.6
Sequence: TTTTGTAAATTGTATCA
Position: -91
Score: 3.8
Sequence: CGTTAGTTTTTCTTCCC
Locus tag: BLi03850
Name: ywrD
Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
BLi03850
ywrD
Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -84
Score: 4.3
Sequence: TGTCAGATTTTCTGGCT
Locus tag: BLi01401
Name: ykgA
Funciton: Arginine deiminase (EC 3.5.3.6)
BLi01401
ykgA
Arginine deiminase (EC 3.5.3.6)
Position: -180
Score: 3.9
Sequence: TATTAAAAAATCTTTCA
Locus tag: BLi00449
Name: yclF
Funciton: Di-tripeptide-proton ABC symporter
BLi00449
yclF
Di-tripeptide-proton ABC symporter
Position: -172
Score: 4.3
Sequence: TGTTATAAAACTTAACG
Position: -59
Score: 3.9
Sequence: TGATAAGAAACATAACA
Position: -37
Score: 4.6
Sequence: CGTAATATAACCTTACA
Locus tag: BLi01176
Name: nrgB2
Funciton: Nitrogen regulatory protein P-II
Locus tag: BLi01175
Name: nrgA2
Funciton: Ammonium transporter
BLi01176
nrgB2
Nitrogen regulatory protein P-II
BLi01175
nrgA2
Ammonium transporter
Position: -107
Score: 4.1
Sequence: TGTGAAAAATTATTACT
Locus tag: BLi03446
Name: rapJ
Funciton: Response regulator aspartate phosphatase I (EC 3.1.-.-)
BLi03446
rapJ
Response regulator aspartate phosphatase I (EC 3.1.-.-)
Position: -225
Score: 4.7
Sequence: TTTTACATTATGTAACA
Position: -215
Score: 3.6
Sequence: TGTAACAAACTTTCAAA
Position: -106
Score: 3.7
Sequence: TTTAATATTTACTGATA
Locus tag: BLi02096
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Locus tag: BLi02095
Name: ywoF
Funciton: Pectin lyase like protein
BLi02096
brnQ
Branched-chain amino acid transport system carrier protein
BLi02095
ywoF
Pectin lyase like protein
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