Regulon of NtcB in Synechococcus elongatus PCC 7942

Properties
Regulator type:	Transcription factor
TF locus tag:	Synpcc7942_1242
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Nitrite
Regulog:	NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes	10
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By effector - Nitrite
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -109 Score: 4.3 Sequence: TTGCAGAACATGCAT Locus tag: Synpcc7942_1240 Name: nirA Funciton: ferredoxin--nitrite reductase Locus tag: Synpcc7942_1239 Name: nrtA Funciton: nitrate/nitrite ABC transport system, substrate-binding protein Locus tag: Synpcc7942_1238 Name: nrtB Funciton: nitrate/nitrite ABC transport system, permease protein Locus tag: Synpcc7942_1237 Name: nrtC Funciton: nitrate/nitrite ABC transport system, ATP-binding protein Locus tag: Synpcc7942_1236 Name: nrtD Funciton: nitrate/nitrite ABC transport system, ATP-binding protein Locus tag: Synpcc7942_1235 Name: narB Funciton: nitrate reductase
	Synpcc7942_1240	nirA	ferredoxin--nitrite reductase
	Synpcc7942_1239	nrtA	nitrate/nitrite ABC transport system, substrate-binding protein
	Synpcc7942_1238	nrtB	nitrate/nitrite ABC transport system, permease protein
	Synpcc7942_1237	nrtC	nitrate/nitrite ABC transport system, ATP-binding protein
	Synpcc7942_1236	nrtD	nitrate/nitrite ABC transport system, ATP-binding protein
	Synpcc7942_1235	narB	nitrate reductase
Position: -192 Score: 4.3 Sequence: ATGCATGTTCTGCAA Locus tag: Synpcc7942_1241 Name: null Funciton: nitrite reductase related protein Locus tag: Synpcc7942_1242 Name: ntcB Funciton: nitrogen assimilation transcriptional activator NtcB
	Synpcc7942_1241		nitrite reductase related protein
	Synpcc7942_1242	ntcB	nitrogen assimilation transcriptional activator NtcB
Position: -33 Score: 4 Sequence: ATGCAATTCATTCAA Locus tag: Synpcc7942_1175 Name: psbL Funciton: photosystem II protein L Locus tag: Synpcc7942_1174 Name: psbJ Funciton: photosystem II protein J
	Synpcc7942_1175	psbL	photosystem II protein L
	Synpcc7942_1174	psbJ	photosystem II protein J

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD