Profile of regulator NtcB in Cyanobacteria
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Nitrite |
| Regulog: | NtcB - Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LysR
- By effector - Nitrite
- By pathway - Nitrogen assimilation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Synechococcus sp. PCC 7002 | |||||
| SYNPCC7002_A1827 | nirA | -162 | 4 | ATGCGGCGATCGCAT | |
| SYNPCC7002_A1632 | ntcB | -56 | 4.4 | ATGCAGTAAACTCAT | |
| SYNPCC7002_A0232 | psbL | -30 | 4.2 | ATGCAGTTTATTCAA | |
| SYNPCC7002_A2151 | psbM | -289 | 4.5 | ATGCGGAACCTGCAT | |
| SYNPCC7002_A1732 | yrdC | -51 | 4.8 | ATGCAGCAATTGCAT | |
| Synechocystis sp. PCC 6803 | |||||
| sll1450 | nrtA | -125 | 4.9 | ATGCAGTAATCGCAT | |
| slr0898 | nirA | -103 | 4.8 | ATGCGTAAACTGCAT | |
| slr0395 | ntcB | -187 | 4 | ATGGATTCTTTTCAT | |
| smr0007 | psbL | -30 | 4.3 | ATGCAATTTATTCAA | |
| Cyanothece sp. ATCC 51142 | |||||
| cce_1223 | nirA | -127 | 4.7 | ATGCAAAAAATCCAT | |
| cce_1223 | nirA | -105 | 4.1 | ATGCAAAAAACGGAT | |
| cce_0198 | ntcB | -125 | 3.6 | AGACAAAAACTCCAT | |
| cce_1304 | psbL | -31 | 4.2 | ATGCAGTTTATTCAA | |
| cce_0893 | psbM | -247 | 4.2 | ATGTGGAACCTGCAT | |
| cce_1062 | yrdC | -69 | 4.4 | ATGCGTTTTTTGTAT | |
| Cyanothece sp. PCC 8801 | |||||
| PCC8801_4396 | nrtA | -235 | 4.5 | ATGCAAAAACCACAT | |
| PCC8801_4396 | nrtA | -213 | 4 | ATGCTTTTATTGCAA | |
| PCC8801_2468 | nirA | -126 | 3.9 | ATGCAAAATAATCAT | |
| PCC8801_4145 | psbL | -30 | 4.3 | ATGCAATTTATTCAA | |
| PCC8801_2861 | psbM | -249 | 4.2 | ATGCGGAACCTGTAT | |
| Cyanothece sp. PCC 7425 | |||||
| Cyan7425_4573 | nirA | -174 | 4.5 | ATGCAGGTTTGGCAT | |
| Cyan7425_2230 | psbJ | -238 | 4.6 | ATGCAGTTTATTCAT | |
| Cyan7425_0859 | psbM | -220 | 3.9 | ATGCGGCACCTGTAT | |
| Microcystis aeruginosa NIES-843 | |||||
| MAE_18410 | nirA | -241 | 4.6 | ATGCACTTACTGCAT | |
| MAE_53960 | narB | -140 | 4 | ATGCGCGATTTGCAT | |
| MAE_33000 | psbJ | -193 | 4.2 | ATGCAGTTTATTCAA | |
| MAE_14800 | nrtA | -395 | 3.7 | ATGCTTTTATGACAT | |
| Nostoc sp. PCC 7120 | |||||
| all3333 | nrtA | -135 | 4.4 | ATGCAATTTTTACAA | |
| all0602 | ntcB | -31 | 3.9 | ATGCCGTAAATGTAA | |
| asr3847 | psbL | -41 | 4.2 | ATGCAGTTTATTCAA | |
| asl0883 | psbM | -257 | 4.3 | ATGCGGTACTTGTAT | |
| alr0607 | nirA | -562 | 4.8 | ATGCAGAAAACGCAT | |
| Trichodesmium erythraeum IMS101 | |||||
| Tery_1068 | nirA | -250 | 4.7 | ATGTAATAAATGCAT | |
| Tery_4333 | ntcB | -87 | 4.1 | ATGAAATATTTATAT | |
| Tery_3506 | psbL | -33 | 4.2 | ATGCAGTTTATTCAA | |
| Synechococcus elongatus PCC 7942 | |||||
| Synpcc7942_1240 | nirA | -109 | 4.3 | TTGCAGAACATGCAT | |
| Synpcc7942_1241 | null | -192 | 4.3 | ATGCATGTTCTGCAA | |
| Synpcc7942_1175 | psbL | -33 | 4 | ATGCAATTCATTCAA | |
| Synechococcus sp. JA-3-3Ab | |||||
| CYA_0612 | nirA | -101 | 4.4 | ATGACAAAACTGCAT | |
| CYA_2428 | psbL | -26 | 4.2 | ATGCAGTTTATTCAA | |
| Gloeobacter violaceus PCC 7421 | |||||
| gvip111 | psbL | -36 | 3.9 | ATGCAGTTTATCCAG | |
| Thermosynechococcus elongatus BP-1 | |||||
| tlr1349 | nirA | -111 | 4.4 | ATACAAAAACTGTAT | |
| null | ntcB | -99 | 4.2 | ATGGGAAAGTTGCAT | |
| null | psbL | -33 | 4.2 | ATGCAGTTTATCCAA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |