Regulon of NtcB in Nostoc sp. PCC 7120
| Regulator type: | Transcription factor |
| TF locus tag: | all0602 |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Nitrite |
| Regulog: | NtcB - Cyanobacteria |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LysR
- By effector - Nitrite
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -562
Score: 4.8 Sequence: ATGCAGAAAACGCAT
Locus tag: alr0607
Name: nirA Funciton: ferredoxin--nitrite reductase
Locus tag: alr0608
Name: nrtA Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: alr0609
Name: nrtB Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: alr0610
Name: nrtC Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: alr0611
Name: nrtD Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: alr0612
Name: narB Funciton: nitrate reductase |
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nirA
|
ferredoxin--nitrite reductase
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nrtA
|
nitrate/nitrite ABC transport system, substrate-binding protein
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nrtB
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nitrate/nitrite ABC transport system, permease protein
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nrtC
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nitrate/nitrite ABC transport system, ATP-binding protein
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nrtD
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nitrate/nitrite ABC transport system, ATP-binding protein
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narB
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nitrate reductase
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Position: -135
Score: 4.4 Sequence: ATGCAATTTTTACAA
Locus tag: all3335
Name: nrtB Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: all3334
Name: nrtC Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: all3333
Name: nrtA Funciton: nitrate/nitrite ABC transport system, substrate-binding protein |
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nrtB
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nitrate/nitrite ABC transport system, permease protein
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nrtC
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nitrate/nitrite ABC transport system, ATP-binding protein
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nrtA
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nitrate/nitrite ABC transport system, substrate-binding protein
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Position: -31
Score: 3.9 Sequence: ATGCCGTAAATGTAA
Locus tag: all0602
Name: ntcB Funciton: nitrogen assimilation transcriptional activator NtcB |
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ntcB
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nitrogen assimilation transcriptional activator NtcB
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Position: -41
Score: 4.2 Sequence: ATGCAGTTTATTCAA
Locus tag: asr3847
Name: psbL Funciton: photosystem II protein L
Locus tag: asr3848
Name: psbJ Funciton: photosystem II protein J |
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psbL
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photosystem II protein L
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psbJ
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photosystem II protein J
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Position: -257
Score: 4.3 Sequence: ATGCGGTACTTGTAT
Locus tag: asl0883
Name: psbM Funciton: photosystem II reaction centre M protein |
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psbM
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photosystem II reaction centre M protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |