Regulon of NtcB in Nostoc sp. PCC 7120

Properties
Regulator type:	Transcription factor
TF locus tag:	all0602
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Nitrite
Regulog:	NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes	13
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By effector - Nitrite
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -562 Score: 4.8 Sequence: ATGCAGAAAACGCAT Locus tag: alr0607 Name: nirA Funciton: ferredoxin--nitrite reductase Locus tag: alr0608 Name: nrtA Funciton: nitrate/nitrite ABC transport system, substrate-binding protein Locus tag: alr0609 Name: nrtB Funciton: nitrate/nitrite ABC transport system, permease protein Locus tag: alr0610 Name: nrtC Funciton: nitrate/nitrite ABC transport system, ATP-binding protein Locus tag: alr0611 Name: nrtD Funciton: nitrate/nitrite ABC transport system, ATP-binding protein Locus tag: alr0612 Name: narB Funciton: nitrate reductase
	alr0607	nirA	ferredoxin--nitrite reductase
	alr0608	nrtA	nitrate/nitrite ABC transport system, substrate-binding protein
	alr0609	nrtB	nitrate/nitrite ABC transport system, permease protein
	alr0610	nrtC	nitrate/nitrite ABC transport system, ATP-binding protein
	alr0611	nrtD	nitrate/nitrite ABC transport system, ATP-binding protein
	alr0612	narB	nitrate reductase
Position: -135 Score: 4.4 Sequence: ATGCAATTTTTACAA Locus tag: all3335 Name: nrtB Funciton: nitrate/nitrite ABC transport system, permease protein Locus tag: all3334 Name: nrtC Funciton: nitrate/nitrite ABC transport system, ATP-binding protein Locus tag: all3333 Name: nrtA Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
	all3335	nrtB	nitrate/nitrite ABC transport system, permease protein
	all3334	nrtC	nitrate/nitrite ABC transport system, ATP-binding protein
	all3333	nrtA	nitrate/nitrite ABC transport system, substrate-binding protein
Position: -31 Score: 3.9 Sequence: ATGCCGTAAATGTAA Locus tag: all0602 Name: ntcB Funciton: nitrogen assimilation transcriptional activator NtcB
	all0602	ntcB	nitrogen assimilation transcriptional activator NtcB
Position: -41 Score: 4.2 Sequence: ATGCAGTTTATTCAA Locus tag: asr3847 Name: psbL Funciton: photosystem II protein L Locus tag: asr3848 Name: psbJ Funciton: photosystem II protein J
	asr3847	psbL	photosystem II protein L
	asr3848	psbJ	photosystem II protein J
Position: -257 Score: 4.3 Sequence: ATGCGGTACTTGTAT Locus tag: asl0883 Name: psbM Funciton: photosystem II reaction centre M protein
	asl0883	psbM	photosystem II reaction centre M protein

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