Regulon of NtcB in Cyanothece sp. PCC 8801

Properties
Regulator type:	Transcription factor
TF locus tag:	PCC8801_2329
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Nitrite
Regulog:	NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes	9
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By effector - Nitrite
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -235 Score: 4.5 Sequence: ATGCAAAAACCACAT Position: -213 Score: 4 Sequence: ATGCTTTTATTGCAA Locus tag: PCC8801_4396 Name: nrtA Funciton: nitrate/nitrite ABC transport system, substrate-binding protein Locus tag: PCC8801_4395 Name: nrtB Funciton: nitrate/nitrite ABC transport system, permease protein Locus tag: PCC8801_4394 Name: nrtC Funciton: nitrate/nitrite ABC transport system, ATP-binding protein Locus tag: PCC8801_4393 Name: nrtD Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
	PCC8801_4396	nrtA	nitrate/nitrite ABC transport system, substrate-binding protein
	PCC8801_4395	nrtB	nitrate/nitrite ABC transport system, permease protein
	PCC8801_4394	nrtC	nitrate/nitrite ABC transport system, ATP-binding protein
	PCC8801_4393	nrtD	nitrate/nitrite ABC transport system, ATP-binding protein
Position: -126 Score: 3.9 Sequence: ATGCAAAATAATCAT Locus tag: PCC8801_2468 Name: nirA Funciton: ferredoxin--nitrite reductase Locus tag: PCC8801_2467 Name: nrtP Funciton: nitrate/nitrite transporter
	PCC8801_2468	nirA	ferredoxin--nitrite reductase
	PCC8801_2467	nrtP	nitrate/nitrite transporter
Position: -30 Score: 4.3 Sequence: ATGCAATTTATTCAA Locus tag: PCC8801_4145 Name: psbL Funciton: photosystem II protein L Locus tag: PCC8801_4144 Name: psbJ Funciton: photosystem II protein J
	PCC8801_4145	psbL	photosystem II protein L
	PCC8801_4144	psbJ	photosystem II protein J
Position: -249 Score: 4.2 Sequence: ATGCGGAACCTGTAT Locus tag: PCC8801_2861 Name: psbM Funciton: photosystem II reaction centre M protein
	PCC8801_2861	psbM	photosystem II reaction centre M protein

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD