Regulon of NtcB in Cyanothece sp. ATCC 51142

Properties
Regulator type:	Transcription factor
TF locus tag:	cce_0198
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Nitrite
Regulog:	NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes	7
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By effector - Nitrite
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -127 Score: 4.7 Sequence: ATGCAAAAAATCCAT Position: -105 Score: 4.1 Sequence: ATGCAAAAAACGGAT Locus tag: cce_1223 Name: nirA Funciton: ferredoxin--nitrite reductase Locus tag: cce_1222 Name: nrtP Funciton: nitrate/nitrite transporter
	cce_1223	nirA	ferredoxin--nitrite reductase
	cce_1222	nrtP	nitrate/nitrite transporter
Position: -125 Score: 3.6 Sequence: AGACAAAAACTCCAT Locus tag: cce_0198 Name: ntcB Funciton: nitrogen assimilation transcriptional activator NtcB
	cce_0198	ntcB	nitrogen assimilation transcriptional activator NtcB
Position: -31 Score: 4.2 Sequence: ATGCAGTTTATTCAA Locus tag: cce_1304 Name: psbL Funciton: photosystem II protein L Locus tag: cce_1303 Name: psbJ Funciton: photosystem II protein J
	cce_1304	psbL	photosystem II protein L
	cce_1303	psbJ	photosystem II protein J
Position: -247 Score: 4.2 Sequence: ATGTGGAACCTGCAT Locus tag: cce_0893 Name: psbM Funciton: photosystem II reaction centre M protein
	cce_0893	psbM	photosystem II reaction centre M protein
Position: -69 Score: 4.4 Sequence: ATGCGTTTTTTGTAT Locus tag: cce_1062 Name: yrdC Funciton: putative YrdC-like RNA-binding protein
	cce_1062	yrdC	putative YrdC-like RNA-binding protein

Export
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