Regulon of NtcB in Synechococcus sp. PCC 7002

Properties
Regulator type:	Transcription factor
TF locus tag:	SYNPCC7002_A1632
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Nitrite
Regulog:	NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes	6
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LysR
By effector - Nitrite
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -162 Score: 4 Sequence: ATGCGGCGATCGCAT Locus tag: SYNPCC7002_A1827 Name: nirA Funciton: ferredoxin--nitrite reductase
	SYNPCC7002_A1827	nirA	ferredoxin--nitrite reductase
Position: -56 Score: 4.4 Sequence: ATGCAGTAAACTCAT Locus tag: SYNPCC7002_A1632 Name: ntcB Funciton: nitrogen assimilation transcriptional activator NtcB
	SYNPCC7002_A1632	ntcB	nitrogen assimilation transcriptional activator NtcB
Position: -30 Score: 4.2 Sequence: ATGCAGTTTATTCAA Locus tag: SYNPCC7002_A0232 Name: psbL Funciton: photosystem II protein L Locus tag: SYNPCC7002_A0233 Name: psbJ Funciton: photosystem II protein J
	SYNPCC7002_A0232	psbL	photosystem II protein L
	SYNPCC7002_A0233	psbJ	photosystem II protein J
Position: -289 Score: 4.5 Sequence: ATGCGGAACCTGCAT Locus tag: SYNPCC7002_A2151 Name: psbM Funciton: photosystem II reaction centre M protein
	SYNPCC7002_A2151	psbM	photosystem II reaction centre M protein
Position: -51 Score: 4.8 Sequence: ATGCAGCAATTGCAT Locus tag: SYNPCC7002_A1732 Name: yrdC Funciton: putative YrdC-like RNA-binding protein
	SYNPCC7002_A1732	yrdC	putative YrdC-like RNA-binding protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD