Regulon of NtcB in Synechococcus sp. PCC 7002
| Regulator type: | Transcription factor |
| TF locus tag: | SYNPCC7002_A1632 |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Nitrite |
| Regulog: | NtcB - Cyanobacteria |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LysR
- By effector - Nitrite
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -162
Score: 4 Sequence: ATGCGGCGATCGCAT
Locus tag: SYNPCC7002_A1827
Name: nirA Funciton: ferredoxin--nitrite reductase |
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nirA
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ferredoxin--nitrite reductase
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Position: -56
Score: 4.4 Sequence: ATGCAGTAAACTCAT
Locus tag: SYNPCC7002_A1632
Name: ntcB Funciton: nitrogen assimilation transcriptional activator NtcB |
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ntcB
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nitrogen assimilation transcriptional activator NtcB
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Position: -30
Score: 4.2 Sequence: ATGCAGTTTATTCAA
Locus tag: SYNPCC7002_A0232
Name: psbL Funciton: photosystem II protein L
Locus tag: SYNPCC7002_A0233
Name: psbJ Funciton: photosystem II protein J |
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psbL
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photosystem II protein L
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psbJ
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photosystem II protein J
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Position: -289
Score: 4.5 Sequence: ATGCGGAACCTGCAT
Locus tag: SYNPCC7002_A2151
Name: psbM Funciton: photosystem II reaction centre M protein |
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psbM
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photosystem II reaction centre M protein
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Position: -51
Score: 4.8 Sequence: ATGCAGCAATTGCAT
Locus tag: SYNPCC7002_A1732
Name: yrdC Funciton: putative YrdC-like RNA-binding protein |
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yrdC
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putative YrdC-like RNA-binding protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |