Regulon of NtcA in Thermosynechococcus elongatus BP-1

Properties
Regulator type:	Transcription factor
TF locus tag:	null
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	27
- Operons	14
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -175 Score: 4.4 Sequence: TGTTAAATTAGATACA Locus tag: null Name: gifB Funciton: Glutamine synthetase inactivating factor IF17
	null	gifB	Glutamine synthetase inactivating factor IF17
Position: -190 Score: 4.4 Sequence: TGTATAACGTGATACA Locus tag: amt1 Name: amt1 Funciton: ammonium transporter
	amt1	amt1	ammonium transporter
Position: -63 Score: 4.1 Sequence: AGTATTGGATATTACA Locus tag: tsr2448 Name: SYNPCC7002_A0076 Funciton: hypothetical protein
	tsr2448	SYNPCC7002_A0076	hypothetical protein
Position: -85 Score: 4.3 Sequence: TGTAGTTGAGTTTACA Locus tag: tlr1468 Name: SYNPCC7002_A2395 Funciton: hypothetical protein
	tlr1468	SYNPCC7002_A2395	hypothetical protein
Position: -111 Score: 4.2 Sequence: TGTAACCTATCTTACA Locus tag: tlr0194 Name: tlr0194 Funciton: hypothetical protein Locus tag: tlr0195 Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase
	tlr0194	tlr0194	hypothetical protein
	tlr0195	SYNPCC7002_A1954	putative two-component sensor histidine kinase
Position: -80 Score: 5.1 Sequence: TGTAGCTATTGCTACA Locus tag: tll0591 Name: glnB Funciton: nitrogen regulatory protein P-II
	tll0591	glnB	nitrogen regulatory protein P-II
Position: -82 Score: 4.6 Sequence: AGTAGCAAAATTTACA Locus tag: tlr1349 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent Locus tag: tlr1350 Name: nrtA Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein Locus tag: tlr1351 Name: nrtB Funciton: Nitrate/nitrite ABC transporter, permease protein Locus tag: tlr1352 Name: nrtC Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1 Locus tag: tlr1353 Name: tlr1353 Funciton: putative transposase Locus tag: tlr1354 Name: nrtD Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2 Locus tag: tlr1355 Name: narB Funciton: Nitrate reductase
	tlr1349	nirA	Nitrite reductase, ferredoxin dependent
	tlr1350	nrtA	Nitrate/nitrite ABC transporter, substrate-binding protein
	tlr1351	nrtB	Nitrate/nitrite ABC transporter, permease protein
	tlr1352	nrtC	Nitrate/nitrite ABC transporter, ATP-binding protein 1
	tlr1353	tlr1353	putative transposase
	tlr1354	nrtD	Nitrate/nitrite ABC transporter, ATP-binding protein 2
	tlr1355	narB	Nitrate reductase
Position: -138 Score: 4 Sequence: AGTATTATTCGTTACG Locus tag: tlr1330 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	tlr1330	nrrA	Transcriptional regulator, OmpR family
Position: -122 Score: 3.9 Sequence: TGTATCAATCAACACA Locus tag: null Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	null	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: -195 Score: 3.8 Sequence: AGTTTCTGGAAATACA Locus tag: null Name: isiA Funciton: Iron-stress chlorophyll-binding protein
	null	isiA	Iron-stress chlorophyll-binding protein
Position: -220 Score: 3.6 Sequence: GGTAACTTTTGCTATG Locus tag: null Name: ndhF Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5) Locus tag: null Name: ndhD Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-) Locus tag: tlr0906 Name: cupA Funciton: Carbon dioxide hydration protein
	null	ndhF	NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
	null	ndhD	NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
	tlr0906	cupA	Carbon dioxide hydration protein
Position: -130 Score: 4 Sequence: AGTAGCAATGACAACA Locus tag: tlr2286 Name: trxQ Funciton: Thioredoxin
	tlr2286	trxQ	Thioredoxin
Position: -146 Score: 4.4 Sequence: TGTTAAATTAGATACA Locus tag: null Name: gifB Funciton: Glutamine synthetase inactivating factor IF17
	null	gifB	Glutamine synthetase inactivating factor IF17
Position: -81 Score: 4 Sequence: TGTAGCCTAGCATACA Locus tag: tlr1120 Name: urtA Funciton: Urea ABC transporter, substrate-binding protein Locus tag: tlr1121 Name: urtB Funciton: Urea ABC transporter, permease protein 1 Locus tag: tlr1122 Name: urtC Funciton: Urea ABC transporter, permease protein 2 Locus tag: tlr1123 Name: urtD Funciton: Urea ABC transporter, ATP-binding protein 1 Locus tag: tlr1124 Name: urtE Funciton: Urea ABC transporter, ATP-binding protein 2
	tlr1120	urtA	Urea ABC transporter, substrate-binding protein
	tlr1121	urtB	Urea ABC transporter, permease protein 1
	tlr1122	urtC	Urea ABC transporter, permease protein 2
	tlr1123	urtD	Urea ABC transporter, ATP-binding protein 1
	tlr1124	urtE	Urea ABC transporter, ATP-binding protein 2

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Thermosynechococcus elongatus BP-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --