Regulon of NtcA in Synechococcus elongatus PCC 7942

Properties
Regulator type:	Transcription factor
TF locus tag:	Synpcc7942_0127
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	19
- Operons	10
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -151 Score: 4.1 Sequence: TGTTACATCGATTACA Locus tag: Synpcc7942_0442 Name: amt1 Funciton: ammonium transporter
	Synpcc7942_0442	amt1	ammonium transporter
Position: -27 Score: 4.3 Sequence: TGTATCCGTTGCTACC Locus tag: Synpcc7942_1845 Name: cce_3797 Funciton: conserved hypothetical protein
	Synpcc7942_1845	cce_3797	conserved hypothetical protein
Position: -67 Score: 4.4 Sequence: TGTAACGACGGCTACA Locus tag: Synpcc7942_2107 Name: cynA Funciton: cyanate ABC transporter, substrate binding protein Locus tag: Synpcc7942_2106 Name: cynB Funciton: cyanate ABC transporter, permease protein Locus tag: Synpcc7942_2105 Name: cynD Funciton: cyanate ABC transporter, ATP-binding protein Locus tag: Synpcc7942_2104 Name: cynS Funciton: cyanate hydratase
	Synpcc7942_2107	cynA	cyanate ABC transporter, substrate binding protein
	Synpcc7942_2106	cynB	cyanate ABC transporter, permease protein
	Synpcc7942_2105	cynD	cyanate ABC transporter, ATP-binding protein
	Synpcc7942_2104	cynS	cyanate hydratase
Position: -194 Score: 4.8 Sequence: TGTATCAgcTGTTACA Locus tag: Synpcc7942_2156 Name: glnA Funciton: glutamine synthetase, type I
	Synpcc7942_2156	glnA	glutamine synthetase, type I
Position: -103 Score: 4.8 Sequence: TGTAGCAGTAACTACA Locus tag: Synpcc7942_0321 Name: glnB Funciton: nitrogen regulatory protein P-II
	Synpcc7942_0321	glnB	nitrogen regulatory protein P-II
Position: -220 Score: 4.9 Sequence: TGTAGCAATTGCTACT Position: -149 Score: 4.3 Sequence: AGTATCAATGATTACT Position: -80 Score: 4.4 Sequence: TGTAGTTTCTGTTACC Locus tag: Synpcc7942_1240 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent Locus tag: Synpcc7942_1239 Name: nrtA Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein Locus tag: Synpcc7942_1238 Name: nrtB Funciton: Nitrate/nitrite ABC transporter, permease protein Locus tag: Synpcc7942_1237 Name: nrtC Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1 Locus tag: Synpcc7942_1236 Name: nrtD Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2 Locus tag: Synpcc7942_1235 Name: narB Funciton: Nitrate reductase
	Synpcc7942_1240	nirA	Nitrite reductase, ferredoxin dependent
	Synpcc7942_1239	nrtA	Nitrate/nitrite ABC transporter, substrate-binding protein
	Synpcc7942_1238	nrtB	Nitrate/nitrite ABC transporter, permease protein
	Synpcc7942_1237	nrtC	Nitrate/nitrite ABC transporter, ATP-binding protein 1
	Synpcc7942_1236	nrtD	Nitrate/nitrite ABC transporter, ATP-binding protein 2
	Synpcc7942_1235	narB	Nitrate reductase
Position: -157 Score: 4.7 Sequence: AGTAGCAGTTGCTACA Locus tag: Synpcc7942_0127 Name: ntcA Funciton: Global nitrogen transcription regulator, Crp family
	Synpcc7942_0127	ntcA	Global nitrogen transcription regulator, Crp family
Position: -153 Score: 4.3 Sequence: AGTAATCATTGATACT Position: -82 Score: 4.9 Sequence: AGTAGCAATTGCTACA Locus tag: Synpcc7942_1241 Name: nirB Funciton: Nitrite reductase related protein Locus tag: Synpcc7942_1242 Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	Synpcc7942_1241	nirB	Nitrite reductase related protein
	Synpcc7942_1242	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: -27 Score: 4.3 Sequence: TGTATCCGTTGCTACC Locus tag: Synpcc7942_1845 Name: SYNPCC7002_A2101 Funciton: Conserved hypothetical protein
	Synpcc7942_1845	SYNPCC7002_A2101	Conserved hypothetical protein
Position: -214 Score: 4.8 Sequence: TGTAACAGCTGATACA Locus tag: Synpcc7942_2158 Name: apcF Funciton: phycobilisome core component
	Synpcc7942_2158	apcF	phycobilisome core component

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Synechococcus elongatus PCC 7942

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --