Regulon of NtcA in Trichodesmium erythraeum IMS101

Properties
Regulator type:	Transcription factor
TF locus tag:	Tery_2023
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	20
- Operons	18
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -83 Score: 4.9 Sequence: AGTAGCATTTGATACA Locus tag: Tery_4477 Name: amt1 Funciton: ammonium transporter
	Tery_4477	amt1	ammonium transporter
Position: -191 Score: 4.1 Sequence: TGTAATTTAGACAACA Position: -110 Score: 4.6 Sequence: TGTAACTATATATACT Locus tag: Tery_2891 Name: SYNPCC7002_A0076 Funciton: hypothetical protein
	Tery_2891	SYNPCC7002_A0076	hypothetical protein
Position: -94 Score: 4.3 Sequence: AGTATTCAAAATTACA Locus tag: Tery_0672 Name: SYNPCC7002_A2395 Funciton: hypothetical protein
	Tery_0672	SYNPCC7002_A2395	hypothetical protein
Position: -156 Score: 4.3 Sequence: TGTAGTTATGGCTACC Locus tag: Tery_3912 Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase
	Tery_3912	SYNPCC7002_A1954	putative two-component sensor histidine kinase
Position: -250 Score: 4 Sequence: CGTAACACCCGATACA Locus tag: Tery_3834 Name: glnA Funciton: glutamine synthetase, type I
	Tery_3834	glnA	glutamine synthetase, type I
Position: -188 Score: 4.3 Sequence: AGTATCAAAAATAACA Locus tag: Tery_3369 Name: hupS Funciton: NiFe uptake hydrogenase, small subunit
	Tery_3369	hupS	NiFe uptake hydrogenase, small subunit
Position: -64 Score: 4.1 Sequence: TGTAGCTACTGATAAA Locus tag: Tery_3368 Name: hupL Funciton: NiFe uptake hydrogenase, large subunit
	Tery_3368	hupL	NiFe uptake hydrogenase, large subunit
Position: -276 Score: 3.8 Sequence: TGTATTTTTATATAGT Position: -199 Score: 4.1 Sequence: TGTTATATAAGCTACG Locus tag: Tery_1068 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent Locus tag: Tery_1069 Name: nrtP Funciton: Nitrate/nitrite transporter Locus tag: Tery_1070 Name: narB Funciton: Nitrate reductase
	Tery_1068	nirA	Nitrite reductase, ferredoxin dependent
	Tery_1069	nrtP	Nitrate/nitrite transporter
	Tery_1070	narB	Nitrate reductase
Position: -89 Score: 4.7 Sequence: AGTAGCTTCTGTTACA Locus tag: Tery_0675 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	Tery_0675	nrrA	Transcriptional regulator, OmpR family
Position: -27 Score: 4 Sequence: TGTATAAAATAACACA Locus tag: Tery_4333 Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	Tery_4333	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: -199 Score: 4 Sequence: TGTAAAATTTTGTACC Position: -46 Score: 3.7 Sequence: TGTAAAATAATTTATT Locus tag: Tery_5068 Name: rpoD Funciton: RNA polymerase sigma 70 factor
	Tery_5068	rpoD	RNA polymerase sigma 70 factor
Position: -349 Score: 3.8 Sequence: TGTATCTGATGTTAGG Locus tag: Tery_3029 Name: gifB Funciton: Glutamine synthetase inactivating factor IF17
	Tery_3029	gifB	Glutamine synthetase inactivating factor IF17
Position: -40 Score: 3.5 Sequence: TGTATCATTGTCAATA Locus tag: Tery_1958 Name: fur Funciton: Ferric uptake regulator, Fur family
	Tery_1958	fur	Ferric uptake regulator, Fur family
Position: -293 Score: 3.4 Sequence: GATAACTATTACTACG Locus tag: Tery_4410 Name: rbcL Funciton: RuBisCO large subunit (EC 4.1.1.39)
	Tery_4410	rbcL	RuBisCO large subunit (EC 4.1.1.39)
Position: -134 Score: 3.6 Sequence: AGTAATTGATCATACT Locus tag: Tery_1667 Name: isiA Funciton: Iron-stress chlorophyll-binding protein
	Tery_1667	isiA	Iron-stress chlorophyll-binding protein
Position: -228 Score: 4.2 Sequence: TGTATCCTAGGCAACA Locus tag: Tery_0466 Name: gltS Funciton: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
	Tery_0466	gltS	Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Position: -390 Score: 3.8 Sequence: AGTTACAAAAAAAACA Locus tag: Tery_0130 Name: urtA Funciton: Urea ABC transporter, substrate-binding protein
	Tery_0130	urtA	Urea ABC transporter, substrate-binding protein
Position: -208 Score: 3.9 Sequence: TGTAGTCGTAGATATA Position: -120 Score: 4.7 Sequence: TGTAACTAATTATACT Locus tag: Tery_4747 Name: gor Funciton: glutathione reductase
	Tery_4747	gor	glutathione reductase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Trichodesmium erythraeum IMS101

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --