Regulon of NtcA in Nostoc sp. PCC 7120

Properties
Regulator type:	Transcription factor
TF locus tag:	alr4392
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	37
- Operons	28
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -116 Score: 4.3 Sequence: AGTATCAAAAATAACA Locus tag: all1951 Name: urtA Funciton: Urea ABC transporter, substrate-binding protein Locus tag: all1950 Name: urtB Funciton: Urea ABC transporter, permease protein 1 Locus tag: all1949 Name: urtC Funciton: Urea ABC transporter, permease protein 2 Locus tag: all1948 Name: urtD Funciton: Urea ABC transporter, ATP-binding protein 1 Locus tag: all1947 Name: urtE Funciton: Urea ABC transporter, ATP-binding protein 2
	all1951	urtA	Urea ABC transporter, substrate-binding protein
	all1950	urtB	Urea ABC transporter, permease protein 1
	all1949	urtC	Urea ABC transporter, permease protein 2
	all1948	urtD	Urea ABC transporter, ATP-binding protein 1
	all1947	urtE	Urea ABC transporter, ATP-binding protein 2
Position: -32 Score: 3.6 Sequence: AGTAAAAAGAGTGACA Locus tag: alr1524 Name: rbcL Funciton: RuBisCO large subunit (EC 4.1.1.39) Locus tag: alr1525 Name: rbcX Funciton: Predicted RuBisCo chaperone Locus tag: alr1526 Name: rbcS Funciton: RuBisCO small subunit (EC 4.1.1.39)
	alr1524	rbcL	RuBisCO large subunit (EC 4.1.1.39)
	alr1525	rbcX	Predicted RuBisCo chaperone
	alr1526	rbcS	RuBisCO small subunit (EC 4.1.1.39)
Position: -48 Score: 4.1 Sequence: AATAACAACTGTTACA Locus tag: all4968 Name: gor Funciton: glutathione reductase
	all4968	gor	glutathione reductase
Position: -50 Score: 4.7 Sequence: TGTAACTAAGTATACA Locus tag: alr0992 Name: amt1 Funciton: ammonium transporter
	alr0992	amt1	ammonium transporter
Position: -250 Score: 4.7 Sequence: TGTATTAACTAATACA Locus tag: alr0990 Name: amt1 Funciton: ammonium transporter
	alr0990	amt1	ammonium transporter
Position: -107 Score: 3.7 Sequence: CGTATAGCAAAATACA Locus tag: asr0064 Name: SYNPCC7002_A0076 Funciton: hypothetical protein
	asr0064	SYNPCC7002_A0076	hypothetical protein
Position: -64 Score: 3.9 Sequence: GGTAGTCGGAGTTACA Locus tag: alr4308 Name: SYNPCC7002_A2395 Funciton: hypothetical protein
	alr4308	SYNPCC7002_A2395	hypothetical protein
Position: -250 Score: 4.6 Sequence: TGTAGTGATAGCTACA Locus tag: alr3982 Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase
	alr3982	SYNPCC7002_A1954	putative two-component sensor histidine kinase
Position: -78 Score: 4.7 Sequence: CGTAGCATAAGATACA Locus tag: asl2329 Name: gifA Funciton: glutamine synthetase inactivating factor IF
	asl2329	gifA	glutamine synthetase inactivating factor IF
Position: -142 Score: 4.8 Sequence: TGTAACAAAGACTACA Locus tag: alr2328 Name: glnA Funciton: glutamine synthetase, type I
	alr2328	glnA	glutamine synthetase, type I
Position: -214 Score: 3.8 Sequence: AGTTACACAGACTACA Locus tag: all2319 Name: glnB Funciton: nitrogen regulatory protein P-II
	all2319	glnB	nitrogen regulatory protein P-II
Position: -146 Score: 4.7 Sequence: TGTAGCTTAAATTACT Locus tag: all1127 Name: ndh Funciton: NADH dehydrogenase, type II
	all1127	ndh	NADH dehydrogenase, type II
Position: -75 Score: 4.5 Sequence: AGTAACAAAGACTACA Locus tag: all4312 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	all4312	nrrA	Transcriptional regulator, OmpR family
Position: -151 Score: 3.7 Sequence: GGTATCATTATGAACA Position: -111 Score: 3.7 Sequence: AGTATAGGAAAGTACA Locus tag: alr4392 Name: ntcA Funciton: Global nitrogen transcription regulator, Crp family
	alr4392	ntcA	Global nitrogen transcription regulator, Crp family
Position: -80 Score: 4.5 Sequence: TGTAACAAAATCTACC Position: -21 Score: 4.7 Sequence: TGTAATTAAGGCTACA Locus tag: all0602 Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	all0602	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: -52 Score: 4.3 Sequence: CGTAGTGTATGTTACA Locus tag: all1327 Name: SYNPCC7002_A0264 Funciton: Conserved hypothetical protein
	all1327	SYNPCC7002_A0264	Conserved hypothetical protein
Position: -291 Score: 3.5 Sequence: AGAAGTAGAAGCTACT Locus tag: alr2514 Name: coxB Funciton: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) Locus tag: alr2515 Name: coxA Funciton: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) Locus tag: alr2516 Name: coxC Funciton: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
	alr2514	coxB	Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
	alr2515	coxA	Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
	alr2516	coxC	Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
Position: -218 Score: 4.1 Sequence: TGTAGCTTGAGATTCA Locus tag: all1691 Name: fur Funciton: Ferric uptake regulator, Fur family
	all1691	fur	Ferric uptake regulator, Fur family
Position: -91 Score: 3.6 Sequence: TGTGAATATAGAAACA Locus tag: alr1690 Name: alr1690 Funciton: Peptidoglycan binding domain-containing protein
	alr1690	alr1690	Peptidoglycan binding domain-containing protein
Position: -37 Score: 3.7 Sequence: AGTATTTCTGGCAACA Locus tag: all4001 Name: isiA Funciton: Iron-stress chlorophyll-binding protein
	all4001	isiA	Iron-stress chlorophyll-binding protein
Position: -161 Score: 3.4 Sequence: TGTTACAAAAATTAGG Locus tag: all1258 Name: psbZ Funciton: Photosystem II reaction center protein Z
	all1258	psbZ	Photosystem II reaction center protein Z
Position: -265 Score: 3.5 Sequence: TGGAAAAATTAAAACA Locus tag: alr4344 Name: gltS Funciton: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
	alr4344	gltS	Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
Position: -281 Score: 3.2 Sequence: TGAATTTGATGTAACC Locus tag: alr1911 Name: nifJ Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	alr1911	nifJ	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Position: -260 Score: 4 Sequence: TGTCTTATAAAATACA Locus tag: alr4156 Name: ndhF Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5) Locus tag: alr4157 Name: ndhD Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
	alr4156	ndhF	NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
	alr4157	ndhD	NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Position: -279 Score: 3.6 Sequence: GGTATTTTTTCCTACT Locus tag: asr3935 Name: hanA Funciton: DNA binding protein HU
	asr3935	hanA	DNA binding protein HU
Position: 17 Score: 3.7 Sequence: AGTTACAGATTCTACT Locus tag: alr0052 Name: trxA Funciton: Thioredoxin-1
	alr0052	trxA	Thioredoxin-1
Position: -233 Score: 4.8 Sequence: TGTAGTCTTTGTTACA Locus tag: all2327 Name: apcF Funciton: phycobilisome core component
	all2327	apcF	phycobilisome core component
Position: -6 Score: 3.4 Sequence: TGAAATATGTACAACA Locus tag: alr1827 Name: icd Funciton: Isocitrate dehydrogenase (NADP+)
	alr1827	icd	Isocitrate dehydrogenase (NADP+)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Nostoc sp. PCC 7120

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --