Regulon of NtcA in Nostoc sp. PCC 7120
| Regulator type: | Transcription factor |
| TF locus tag: | alr4392 |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | 2-oxoglutarate |
| Regulog: | NtcA - Cyanobacteria |
| Statistics of regulated genes: | |
| - Genes | 37 |
| - Operons | 28 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - CRP
- By effector - 2-oxoglutarate
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -116
Score: 4.3 Sequence: AGTATCAAAAATAACA
Locus tag: all1951
Name: urtA Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: all1950
Name: urtB Funciton: Urea ABC transporter, permease protein 1
Locus tag: all1949
Name: urtC Funciton: Urea ABC transporter, permease protein 2
Locus tag: all1948
Name: urtD Funciton: Urea ABC transporter, ATP-binding protein 1
Locus tag: all1947
Name: urtE Funciton: Urea ABC transporter, ATP-binding protein 2 |
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urtA
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Urea ABC transporter, substrate-binding protein
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urtB
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Urea ABC transporter, permease protein 1
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urtC
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Urea ABC transporter, permease protein 2
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urtD
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Urea ABC transporter, ATP-binding protein 1
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urtE
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Urea ABC transporter, ATP-binding protein 2
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Position: -32
Score: 3.6 Sequence: AGTAAAAAGAGTGACA
Locus tag: alr1524
Name: rbcL Funciton: RuBisCO large subunit (EC 4.1.1.39)
Locus tag: alr1525
Name: rbcX Funciton: Predicted RuBisCo chaperone
Locus tag: alr1526
Name: rbcS Funciton: RuBisCO small subunit (EC 4.1.1.39) |
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rbcL
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RuBisCO large subunit (EC 4.1.1.39)
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rbcX
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Predicted RuBisCo chaperone
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rbcS
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RuBisCO small subunit (EC 4.1.1.39)
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Position: -48
Score: 4.1 Sequence: AATAACAACTGTTACA
Locus tag: all4968
Name: gor Funciton: glutathione reductase |
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gor
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glutathione reductase
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Position: -50
Score: 4.7 Sequence: TGTAACTAAGTATACA
Locus tag: alr0992
Name: amt1 Funciton: ammonium transporter |
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amt1
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ammonium transporter
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Position: -250
Score: 4.7 Sequence: TGTATTAACTAATACA
Locus tag: alr0990
Name: amt1 Funciton: ammonium transporter |
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amt1
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ammonium transporter
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Position: -107
Score: 3.7 Sequence: CGTATAGCAAAATACA
Locus tag: asr0064
Name: SYNPCC7002_A0076 Funciton: hypothetical protein |
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SYNPCC7002_A0076
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hypothetical protein
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Position: -64
Score: 3.9 Sequence: GGTAGTCGGAGTTACA
Locus tag: alr4308
Name: SYNPCC7002_A2395 Funciton: hypothetical protein |
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SYNPCC7002_A2395
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hypothetical protein
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Position: -250
Score: 4.6 Sequence: TGTAGTGATAGCTACA
Locus tag: alr3982
Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase |
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SYNPCC7002_A1954
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putative two-component sensor histidine kinase
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Position: -78
Score: 4.7 Sequence: CGTAGCATAAGATACA
Locus tag: asl2329
Name: gifA Funciton: glutamine synthetase inactivating factor IF |
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gifA
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glutamine synthetase inactivating factor IF
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Position: -142
Score: 4.8 Sequence: TGTAACAAAGACTACA
Locus tag: alr2328
Name: glnA Funciton: glutamine synthetase, type I |
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glnA
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glutamine synthetase, type I
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Position: -214
Score: 3.8 Sequence: AGTTACACAGACTACA
Locus tag: all2319
Name: glnB Funciton: nitrogen regulatory protein P-II |
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glnB
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nitrogen regulatory protein P-II
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Position: -146
Score: 4.7 Sequence: TGTAGCTTAAATTACT
Locus tag: all1127
Name: ndh Funciton: NADH dehydrogenase, type II |
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ndh
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NADH dehydrogenase, type II
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Position: -75
Score: 4.5 Sequence: AGTAACAAAGACTACA
Locus tag: all4312
Name: nrrA Funciton: Transcriptional regulator, OmpR family |
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nrrA
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Transcriptional regulator, OmpR family
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Position: -151
Score: 3.7 Sequence: GGTATCATTATGAACA
Position: -111
Score: 3.7 Sequence: AGTATAGGAAAGTACA
Locus tag: alr4392
Name: ntcA Funciton: Global nitrogen transcription regulator, Crp family |
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ntcA
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Global nitrogen transcription regulator, Crp family
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Position: -80
Score: 4.5 Sequence: TGTAACAAAATCTACC
Position: -21
Score: 4.7 Sequence: TGTAATTAAGGCTACA
Locus tag: all0602
Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family |
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ntcB
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Nitrogen assimilation transcriptional activator, LysR family
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Position: -52
Score: 4.3 Sequence: CGTAGTGTATGTTACA
Locus tag: all1327
Name: SYNPCC7002_A0264 Funciton: Conserved hypothetical protein |
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SYNPCC7002_A0264
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Conserved hypothetical protein
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Position: -291
Score: 3.5 Sequence: AGAAGTAGAAGCTACT
Locus tag: alr2514
Name: coxB Funciton: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Locus tag: alr2515
Name: coxA Funciton: Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
Locus tag: alr2516
Name: coxC Funciton: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
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coxB
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Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
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coxA
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Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
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coxC
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Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
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Position: -218
Score: 4.1 Sequence: TGTAGCTTGAGATTCA
Locus tag: all1691
Name: fur Funciton: Ferric uptake regulator, Fur family |
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fur
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Ferric uptake regulator, Fur family
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Position: -91
Score: 3.6 Sequence: TGTGAATATAGAAACA
Locus tag: alr1690
Name: alr1690 Funciton: Peptidoglycan binding domain-containing protein |
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alr1690
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Peptidoglycan binding domain-containing protein
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Position: -37
Score: 3.7 Sequence: AGTATTTCTGGCAACA
Locus tag: all4001
Name: isiA Funciton: Iron-stress chlorophyll-binding protein |
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isiA
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Iron-stress chlorophyll-binding protein
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Position: -161
Score: 3.4 Sequence: TGTTACAAAAATTAGG
Locus tag: all1258
Name: psbZ Funciton: Photosystem II reaction center protein Z |
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psbZ
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Photosystem II reaction center protein Z
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Position: -265
Score: 3.5 Sequence: TGGAAAAATTAAAACA
Locus tag: alr4344
Name: gltS Funciton: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13) |
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gltS
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Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
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Position: -281
Score: 3.2 Sequence: TGAATTTGATGTAACC
Locus tag: alr1911
Name: nifJ Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
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nifJ
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Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
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Position: -260
Score: 4 Sequence: TGTCTTATAAAATACA
Locus tag: alr4156
Name: ndhF Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: alr4157
Name: ndhD Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-) |
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ndhF
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NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
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ndhD
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NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
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Position: -279
Score: 3.6 Sequence: GGTATTTTTTCCTACT
Locus tag: asr3935
Name: hanA Funciton: DNA binding protein HU |
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hanA
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DNA binding protein HU
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Position: 17
Score: 3.7 Sequence: AGTTACAGATTCTACT
Locus tag: alr0052
Name: trxA Funciton: Thioredoxin-1 |
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trxA
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Thioredoxin-1
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Position: -233
Score: 4.8 Sequence: TGTAGTCTTTGTTACA
Locus tag: all2327
Name: apcF Funciton: phycobilisome core component |
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apcF
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phycobilisome core component
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Position: -6
Score: 3.4 Sequence: TGAAATATGTACAACA
Locus tag: alr1827
Name: icd Funciton: Isocitrate dehydrogenase (NADP+) |
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icd
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Isocitrate dehydrogenase (NADP+)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |