Regulon of NtcA in Cyanothece sp. ATCC 51142

Properties
Regulator type:	Transcription factor
TF locus tag:	cce_0461
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	23
- Operons	21
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -177 Score: 3.8 Sequence: TGTGATAAGAAATACA Locus tag: cce_1944 Name: apcF Funciton: phycobilisome core component
	cce_1944	apcF	phycobilisome core component
Position: -152 Score: 3.5 Sequence: TGTtAaggtTGTaACA Locus tag: cce_3261 Name: amt1 Funciton: ammonium transporter
	cce_3261	amt1	ammonium transporter
Position: -137 Score: 4 Sequence: TGTAAACTATGATATA Position: -93 Score: 4.8 Sequence: TGTAGTCTTTGTTACA Locus tag: cce_0537 Name: SYNPCC7002_A0076 Funciton: hypothetical protein
	cce_0537	SYNPCC7002_A0076	hypothetical protein
Position: -172 Score: 4.7 Sequence: TGTTACAATAGCTACA Locus tag: cce_4355 Name: SYNPCC7002_A0077 Funciton: hypothetical protein
	cce_4355	SYNPCC7002_A0077	hypothetical protein
Position: -148 Score: 4 Sequence: TGTAACATATGATAAC Position: -87 Score: 4.6 Sequence: TGTAATATTGATTACA Locus tag: cce_2729 Name: SYNPCC7002_A2395 Funciton: hypothetical protein
	cce_2729	SYNPCC7002_A2395	hypothetical protein
Position: -210 Score: 4.7 Sequence: TGTAGTCATAGTTACA Position: -46 Score: 4 Sequence: TTTATTTTCTGTTACA Locus tag: cce_3327 Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase
	cce_3327	SYNPCC7002_A1954	putative two-component sensor histidine kinase
Position: -70 Score: 4.9 Sequence: TGTAGCTTAATATACA Locus tag: cce_3797 Name: cce_3797 Funciton: conserved hypothetical protein
	cce_3797	cce_3797	conserved hypothetical protein
Position: -95 Score: 5.2 Sequence: TGTAGCAAATGTTACA Locus tag: cce_0259 Name: gifA Funciton: glutamine synthetase inactivating factor IF
	cce_0259	gifA	glutamine synthetase inactivating factor IF
Position: -89 Score: 4.5 Sequence: AGTATCCAATTATACA Position: -30 Score: 4 Sequence: TGTATATATTGAAACC Locus tag: cce_4432 Name: glnA Funciton: glutamine synthetase, type I
	cce_4432	glnA	glutamine synthetase, type I
Position: -204 Score: 4.8 Sequence: TGTAAAATTTAATACA Position: -159 Score: 3.8 Sequence: GGTAATAATTAATAGA Locus tag: cce_1063 Name: hupS Funciton: NiFe uptake hydrogenase, small subunit Locus tag: cce_1064 Name: hupL Funciton: NiFe uptake hydrogenase, large subunit
	cce_1063	hupS	NiFe uptake hydrogenase, small subunit
	cce_1064	hupL	NiFe uptake hydrogenase, large subunit
Position: -47 Score: 4.7 Sequence: TGTAACTGTAGTTACT Locus tag: cce_0624 Name: ndh Funciton: NADH dehydrogenase, type II
	cce_0624	ndh	NADH dehydrogenase, type II
Position: -76 Score: 4.7 Sequence: TGTTACATTAGCTACA Locus tag: cce_1223 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent Locus tag: cce_1222 Name: nrtP Funciton: Nitrate/nitrite transporter
	cce_1223	nirA	Nitrite reductase, ferredoxin dependent
	cce_1222	nrtP	Nitrate/nitrite transporter
Position: -76 Score: 4.3 Sequence: CGTAGCCGATGTTACA Locus tag: cce_1808 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	cce_1808	nrrA	Transcriptional regulator, OmpR family
Position: -73 Score: 4.2 Sequence: AGTATCAATTTCTACG Locus tag: cce_0198 Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	cce_0198	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: -70 Score: 4.9 Sequence: TGTAGCTTAATATACA Locus tag: cce_3797 Name: SYNPCC7002_A2101 Funciton: Conserved hypothetical protein
	cce_3797	SYNPCC7002_A2101	Conserved hypothetical protein
Position: -58 Score: 4.4 Sequence: GGTAATCATTGATACA Locus tag: cce_0267 Name: psbA3 Funciton: Photosystem II D1 protein
	cce_0267	psbA3	Photosystem II D1 protein
Position: -232 Score: 4.3 Sequence: AGTAATCAAGGCTACA Locus tag: cce_0875 Name: rpoD Funciton: RNA polymerase sigma 70 factor
	cce_0875	rpoD	RNA polymerase sigma 70 factor
Position: -144 Score: 5.2 Sequence: TGTAACAATAGATACA Locus tag: cce_2638 Name: gifB Funciton: Glutamine synthetase inactivating factor IF17
	cce_2638	gifB	Glutamine synthetase inactivating factor IF17
Position: -332 Score: 3.7 Sequence: AATAGCTATAATTACT Locus tag: cce_2390 Name: trxQ Funciton: Thioredoxin
	cce_2390	trxQ	Thioredoxin
Position: -52 Score: 3.8 Sequence: TGCAACAAAAATTACC Locus tag: cce_0953 Name: nifJ Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	cce_0953	nifJ	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Position: -20 Score: 4.2 Sequence: TGTAACTGTATTAACA Locus tag: cce_3633 Name: psbZ Funciton: Photosystem II reaction center protein Z
	cce_3633	psbZ	Photosystem II reaction center protein Z

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Cyanothece sp. ATCC 51142

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --