Regulon of NtcA in Synechocystis sp. PCC 6803

Properties
Regulator type:	Transcription factor
TF locus tag:	sll1423
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	23
- Operons	18
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -228 Score: 4.3 Sequence: TGTAATTTAAAAAACA Locus tag: slr0009 Name: rbcL Funciton: RuBisCO large subunit (EC 4.1.1.39)
	slr0009	rbcL	RuBisCO large subunit (EC 4.1.1.39)
Position: -189 Score: 4 Sequence: AGTAGTAAATCATACA Position: -18 Score: 4.4 Sequence: TGTAGATTAAAGTACA Locus tag: sll0108 Name: amt1 Funciton: ammonium transporter
	sll0108	amt1	ammonium transporter
Position: -78 Score: 4.5 Sequence: TGTAATCGATAATACA Locus tag: ssr1562 Name: SYNPCC7002_A0076 Funciton: hypothetical protein
	ssr1562	SYNPCC7002_A0076	hypothetical protein
Position: -214 Score: 4.7 Sequence: TGTAATGATAGTTACA Locus tag: slr1147 Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase
	slr1147	SYNPCC7002_A1954	putative two-component sensor histidine kinase
Position: -89 Score: 5 Sequence: TGTATAAAATGTTACA Locus tag: ssl1911 Name: gifA Funciton: glutamine synthetase inactivating factor IF
	ssl1911	gifA	glutamine synthetase inactivating factor IF
Position: -98 Score: 4.3 Sequence: GGTAGCGAAAAATACA Locus tag: slr1756 Name: glnA Funciton: glutamine synthetase, type I
	slr1756	glnA	glutamine synthetase, type I
Position: -184 Score: 3.7 Sequence: GGTACTGATTTTTACA Locus tag: ssl0707 Name: glnB Funciton: nitrogen regulatory protein P-II
	ssl0707	glnB	nitrogen regulatory protein P-II
Position: -72 Score: 4.1 Sequence: TGTAACAACCATTACC Locus tag: slr0851 Name: ndh Funciton: NADH dehydrogenase, type II
	slr0851	ndh	NADH dehydrogenase, type II
Position: -96 Score: 3.9 Sequence: AGTTACAAACTATACA Locus tag: sll1450 Name: nrtA Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein Locus tag: sll1451 Name: nrtB Funciton: Nitrate/nitrite ABC transporter, permease protein Locus tag: sll1452 Name: nrtC Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1 Locus tag: sll1453 Name: nrtD Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2 Locus tag: sll1454 Name: narB Funciton: Nitrate reductase
	sll1450	nrtA	Nitrate/nitrite ABC transporter, substrate-binding protein
	sll1451	nrtB	Nitrate/nitrite ABC transporter, permease protein
	sll1452	nrtC	Nitrate/nitrite ABC transporter, ATP-binding protein 1
	sll1453	nrtD	Nitrate/nitrite ABC transporter, ATP-binding protein 2
	sll1454	narB	Nitrate reductase
Position: -74 Score: 4.7 Sequence: TGTAATTTACGTTACA Locus tag: slr0898 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent
	slr0898	nirA	Nitrite reductase, ferredoxin dependent
Position: -75 Score: 4.6 Sequence: GGTAACTGTTGTTACA Locus tag: sll1330 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	sll1330	nrrA	Transcriptional regulator, OmpR family
Position: -246 Score: 3.9 Sequence: TGTTATCGAGGCTACA Locus tag: slr0653 Name: rpoD Funciton: RNA polymerase sigma 70 factor
	slr0653	rpoD	RNA polymerase sigma 70 factor
Position: -119 Score: 4.2 Sequence: CGTAAAAATGGATACA Locus tag: sll1515 Name: gifB Funciton: Glutamine synthetase inactivating factor IF17
	sll1515	gifB	Glutamine synthetase inactivating factor IF17
Position: -181 Score: 3.3 Sequence: AGAATCAACAAAAACA Locus tag: sll0741 Name: nifJ Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	sll0741	nifJ	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Position: -264 Score: 3.8 Sequence: GGTAGTTTTTGAAACT Locus tag: sll1712 Name: hanA Funciton: DNA binding protein HU
	sll1712	hanA	DNA binding protein HU
Position: -252 Score: 4 Sequence: TGTAACAATTTTTAGT Locus tag: sll1733 Name: ndhD Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-) Locus tag: sll1734 Name: cupA Funciton: Carbon dioxide hydration protein
	sll1733	ndhD	NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
	sll1734	cupA	Carbon dioxide hydration protein
Position: -244 Score: 4 Sequence: TGTAACAAATAACACT Locus tag: sll1732 Name: ndhF Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
	sll1732	ndhF	NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Position: -211 Score: 4.5 Sequence: GGTATCCTATGCTACA Locus tag: slr0447 Name: urtA Funciton: Urea ABC transporter, substrate-binding protein
	slr0447	urtA	Urea ABC transporter, substrate-binding protein

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Synechocystis sp. PCC 6803

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --