Regulon of NtcA in Synechococcus sp. PCC 7002

Properties
Regulator type:	Transcription factor
TF locus tag:	SYNPCC7002_A1675
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	23
- Operons	16
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -127 Score: 4.1 Sequence: TGTATCAAGTGTCACA Locus tag: SYNPCC7002_A0398 Name: urtA Funciton: Urea ABC transporter, substrate-binding protein Locus tag: SYNPCC7002_A0397 Name: urtB Funciton: Urea ABC transporter, permease protein 1 Locus tag: SYNPCC7002_A0396 Name: urtC Funciton: Urea ABC transporter, permease protein 2 Locus tag: SYNPCC7002_A0395 Name: urtD Funciton: Urea ABC transporter, ATP-binding protein 1
	SYNPCC7002_A0398	urtA	Urea ABC transporter, substrate-binding protein
	SYNPCC7002_A0397	urtB	Urea ABC transporter, permease protein 1
	SYNPCC7002_A0396	urtC	Urea ABC transporter, permease protein 2
	SYNPCC7002_A0395	urtD	Urea ABC transporter, ATP-binding protein 1
Position: -52 Score: 3.7 Sequence: GGTTACTTCTGCTACC Locus tag: SYNPCC7002_A2208 Name: amt1 Funciton: ammonium transporter
	SYNPCC7002_A2208	amt1	ammonium transporter
Position: -97 Score: 4.2 Sequence: AGTATTGAAATATACA Locus tag: SYNPCC7002_A0076 Name: SYNPCC7002_A0076 Funciton: hypothetical protein Locus tag: SYNPCC7002_A0077 Name: SYNPCC7002_A0077 Funciton: hypothetical protein
	SYNPCC7002_A0076	SYNPCC7002_A0076	hypothetical protein
	SYNPCC7002_A0077	SYNPCC7002_A0077	hypothetical protein
Position: -200 Score: 4.5 Sequence: TGTTACTTAAATTACA Position: -92 Score: 4.5 Sequence: TGTAGTAGACGTTACA Locus tag: SYNPCC7002_A2395 Name: SYNPCC7002_A2395 Funciton: hypothetical protein
	SYNPCC7002_A2395	SYNPCC7002_A2395	hypothetical protein
Position: -243 Score: 4.7 Sequence: TGTAACAGGAGTTACA Locus tag: SYNPCC7002_A1954 Name: SYNPCC7002_A1954 Funciton: putative two-component sensor histidine kinase
	SYNPCC7002_A1954	SYNPCC7002_A1954	putative two-component sensor histidine kinase
Position: -237 Score: 4.5 Sequence: CGTATCTTTAATTACA Locus tag: SYNPCC7002_A0643 Name: cynS Funciton: cyanate hydratase
	SYNPCC7002_A0643	cynS	cyanate hydratase
Position: -221 Score: 4.1 Sequence: TGTAATTGATTTAACA Locus tag: SYNPCC7002_A0860 Name: cynA Funciton: cyanate ABC transporter, substrate binding protein Locus tag: SYNPCC7002_A0861 Name: cynB Funciton: cyanate ABC transporter, permease protein Locus tag: SYNPCC7002_A0862 Name: cynD Funciton: cyanate ABC transporter, ATP-binding protein Locus tag: SYNPCC7002_A0863 Name: cynS Funciton: cyanate hydratase
	SYNPCC7002_A0860	cynA	cyanate ABC transporter, substrate binding protein
	SYNPCC7002_A0861	cynB	cyanate ABC transporter, permease protein
	SYNPCC7002_A0862	cynD	cyanate ABC transporter, ATP-binding protein
	SYNPCC7002_A0863	cynS	cyanate hydratase
Position: -96 Score: 5 Sequence: TGTATCAAATTTTACA Locus tag: SYNPCC7002_A0582 Name: gifA Funciton: glutamine synthetase inactivating factor IF
	SYNPCC7002_A0582	gifA	glutamine synthetase inactivating factor IF
Position: -125 Score: 3.5 Sequence: TGTgACccAgacTACA Locus tag: SYNPCC7002_A1630 Name: glnA Funciton: glutamine synthetase, type I
	SYNPCC7002_A1630	glnA	glutamine synthetase, type I
Position: -111 Score: 4 Sequence: CGTAGTTAACACTACA Locus tag: SYNPCC7002_A1827 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent
	SYNPCC7002_A1827	nirA	Nitrite reductase, ferredoxin dependent
Position: -75 Score: 4.1 Sequence: CGTAACCACGGTTACA Locus tag: SYNPCC7002_A0496 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	SYNPCC7002_A0496	nrrA	Transcriptional regulator, OmpR family
Position: -177 Score: 3.9 Sequence: TGAAGCAAAAAGTACA Locus tag: SYNPCC7002_A1675 Name: ntcA Funciton: Global nitrogen transcription regulator, Crp family
	SYNPCC7002_A1675	ntcA	Global nitrogen transcription regulator, Crp family
Position: -87 Score: 3.9 Sequence: TGTAACATccGgaACA Locus tag: SYNPCC7002_A1632 Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	SYNPCC7002_A1632	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: 67 Score: 5 Sequence: TGTATCATtaaATACA Locus tag: SYNPCC7002_A2101 Name: SYNPCC7002_A2101 Funciton: Conserved hypothetical protein
	SYNPCC7002_A2101	SYNPCC7002_A2101	Conserved hypothetical protein
Position: -29 Score: 5 Sequence: TGTATCAAATACTACA Locus tag: SYNPCC7002_A0264 Name: SYNPCC7002_A0264 Funciton: Conserved hypothetical protein
	SYNPCC7002_A0264	SYNPCC7002_A0264	Conserved hypothetical protein
Position: -272 Score: 4.1 Sequence: TTTATCATTTTCTACA Locus tag: SYNPCC7002_A1443 Name: nifJ Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	SYNPCC7002_A1443	nifJ	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)

Export
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Synechococcus sp. PCC 7002

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --