Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YtrA - Staphylococcaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Hypothetical ABC transporter
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 5 1
Staphylococcus capitis SK14 5 1
Staphylococcus epidermidis ATCC 12228 5 1
Staphylococcus carnosus subsp. carnosus TM300 5 1
Staphylococcus haemolyticus JCSC1435 5 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 6 1
Macrococcus caseolyticus JCSC5402
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ytrA
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -42
score = 6.76542
sequence = TGTGTATATTGTATATATACA

Gene: SA1748: transcription regulator GntR family
*
Staphylococcus capitis SK14

Site:
position = -40
score = 6.97084
sequence = TGTATATATTATGTATATACA

Gene: STACA0001_1986: transcription regulator GntR family
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -40
score = 6.97084
sequence = TGTATATATTATGTATATACA

Gene: SE1625: transcription regulator GntR family
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -38
score = 6.81284
sequence = TGTGTATACTGTGTATATACA

Site:
position = -128
score = 6.90576
sequence = TGTATATATACAATATATACA

Gene: Sca_1508: transcription regulator GntR family
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -41
score = 6.59051
sequence = TGTGTATACTATTTATATACA

Site:
position = -127
score = 6.40287
sequence = TGTATCTATAATGTATATACA

Gene: SH1021: transcription regulator GntR family
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -40
score = 6.68949
sequence = TGTATATATTGCGTATATACA

Gene: SSP0856: transcription regulator GntR family
 
Macrococcus caseolyticus JCSC5402
transcription regulator GntR family
ytrB
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1747: ABC transporter (ATP-binding protein)
 
Staphylococcus capitis SK14

Gene: STACA0001_1985: ABC transporter (ATP-binding protein)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1624: ABC transporter (ATP-binding protein)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1507: ABC transporter (ATP-binding protein)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1022: ABC transporter (ATP-binding protein)
 2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0858: ABC transporter (ATP-binding protein)

Gene: SSP0857: ABC transporter (ATP-binding protein)
 
Macrococcus caseolyticus JCSC5402
ABC transporter (ATP-binding protein)
SA1746
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1746: putative membrane protein
 
Staphylococcus capitis SK14

Gene: STACA0001_1984: putative membrane protein
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1623: putative membrane protein
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1506: putative membrane protein
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1023: putative membrane protein
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0859: putative membrane protein
 
Macrococcus caseolyticus JCSC5402
putative membrane protein
SA1745
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1745: ABC transporter (ATP-binding protein)
 
Staphylococcus capitis SK14

Gene: STACA0001_1983: ABC transporter (ATP-binding protein)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1622: ABC transporter (ATP-binding protein)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1505: ABC transporter (ATP-binding protein)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1024: ABC transporter (ATP-binding protein)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0860: ABC transporter (ATP-binding protein)
 
Macrococcus caseolyticus JCSC5402
ABC transporter (ATP-binding protein)
SA1744
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1744: putative membrane protein
 
Staphylococcus capitis SK14

Gene: STACA0001_1982: putative membrane protein
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1621: putative membrane protein
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1504: putative membrane protein
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1025: putative membrane protein
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP0861: putative membrane protein
 
Macrococcus caseolyticus JCSC5402
putative membrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD