Regulog YtrA - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Hypothetical ABC transporter
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By TF family - GntR/Others
By pathway - Hypothetical ABC transporter

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	5	1
Staphylococcus capitis SK14	5	1
Staphylococcus epidermidis ATCC 12228	5	1
Staphylococcus carnosus subsp. carnosus TM300	5	1
Staphylococcus haemolyticus JCSC1435	5	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	6	1
Macrococcus caseolyticus JCSC5402

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
ytrA	* Staphylococcus aureus subsp. aureus N315 Site: position = -42 score = 6.76542 sequence = TGTGTATATTGTATATATACA Gene: SA1748: transcription regulator GntR family	* Staphylococcus capitis SK14 Site: position = -40 score = 6.97084 sequence = TGTATATATTATGTATATACA Gene: STACA0001_1986: transcription regulator GntR family	* Staphylococcus epidermidis ATCC 12228 Site: position = -40 score = 6.97084 sequence = TGTATATATTATGTATATACA Gene: SE1625: transcription regulator GntR family	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -38 score = 6.81284 sequence = TGTGTATACTGTGTATATACA Site: position = -128 score = 6.90576 sequence = TGTATATATACAATATATACA Gene: Sca_1508: transcription regulator GntR family	* Staphylococcus haemolyticus JCSC1435 Site: position = -41 score = 6.59051 sequence = TGTGTATACTATTTATATACA Site: position = -127 score = 6.40287 sequence = TGTATCTATAATGTATATACA Gene: SH1021: transcription regulator GntR family	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -40 score = 6.68949 sequence = TGTATATATTGCGTATATACA Gene: SSP0856: transcription regulator GntR family	Macrococcus caseolyticus JCSC5402	transcription regulator GntR family
ytrB	Staphylococcus aureus subsp. aureus N315 Gene: SA1747: ABC transporter (ATP-binding protein)	Staphylococcus capitis SK14 Gene: STACA0001_1985: ABC transporter (ATP-binding protein)	Staphylococcus epidermidis ATCC 12228 Gene: SE1624: ABC transporter (ATP-binding protein)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1507: ABC transporter (ATP-binding protein)	Staphylococcus haemolyticus JCSC1435 Gene: SH1022: ABC transporter (ATP-binding protein)	2 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0858: ABC transporter (ATP-binding protein) Gene: SSP0857: ABC transporter (ATP-binding protein)	Macrococcus caseolyticus JCSC5402	ABC transporter (ATP-binding protein)
SA1746	Staphylococcus aureus subsp. aureus N315 Gene: SA1746: putative membrane protein	Staphylococcus capitis SK14 Gene: STACA0001_1984: putative membrane protein	Staphylococcus epidermidis ATCC 12228 Gene: SE1623: putative membrane protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1506: putative membrane protein	Staphylococcus haemolyticus JCSC1435 Gene: SH1023: putative membrane protein	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0859: putative membrane protein	Macrococcus caseolyticus JCSC5402	putative membrane protein
SA1745	Staphylococcus aureus subsp. aureus N315 Gene: SA1745: ABC transporter (ATP-binding protein)	Staphylococcus capitis SK14 Gene: STACA0001_1983: ABC transporter (ATP-binding protein)	Staphylococcus epidermidis ATCC 12228 Gene: SE1622: ABC transporter (ATP-binding protein)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1505: ABC transporter (ATP-binding protein)	Staphylococcus haemolyticus JCSC1435 Gene: SH1024: ABC transporter (ATP-binding protein)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0860: ABC transporter (ATP-binding protein)	Macrococcus caseolyticus JCSC5402	ABC transporter (ATP-binding protein)
SA1744	Staphylococcus aureus subsp. aureus N315 Gene: SA1744: putative membrane protein	Staphylococcus capitis SK14 Gene: STACA0001_1982: putative membrane protein	Staphylococcus epidermidis ATCC 12228 Gene: SE1621: putative membrane protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1504: putative membrane protein	Staphylococcus haemolyticus JCSC1435 Gene: SH1025: putative membrane protein	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0861: putative membrane protein	Macrococcus caseolyticus JCSC5402	putative membrane protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YtrA - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --