Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog XylR - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795
Clostridium difficile 630 8 3
Clostridium hiranonis DSM 13275
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
xylS
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -127
score = 5.51258
sequence = GTAAGTTAGTTTAATGTACAAAT

Gene: CD3071: Alpha-xylosidase
 
Clostridium hiranonis DSM 13275
Alpha-xylosidase
CD3070
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD3070: Phosphotransferase system for xylose-containing disaccharide, EIIC component
 
Clostridium hiranonis DSM 13275
Phosphotransferase system for xylose-containing disaccharide, EIIC component
CD3069
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD3069: Phosphotransferase system for xylose-containing disaccharide, EIID component
 
Clostridium hiranonis DSM 13275
Phosphotransferase system for xylose-containing disaccharide, EIID component
CD3068
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD3068: Phosphotransferase system for xylose-containing disaccharide, EIIB component
 
Clostridium hiranonis DSM 13275
Phosphotransferase system for xylose-containing disaccharide, EIIB component
CD3067
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD3067: Phosphotransferase system for xylose-containing disaccharide, EIIA component
 
Clostridium hiranonis DSM 13275
Phosphotransferase system for xylose-containing disaccharide, EIIA component
 
CRON 2.
xylR
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -123
score = 5.39712
sequence = GTTAGTATATTAAACTAACTTAT

Gene: CD3066: Xylose repressor XylR, ROK family
 
Clostridium hiranonis DSM 13275
Xylose repressor XylR, ROK family
 
CRON 3.
xylB
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -113
score = 5.44677
sequence = ATAAGTTAGTTTAATATACTAAC

Gene: CD3065: Xylulose kinase (EC 2.7.1.17)
 
Clostridium hiranonis DSM 13275
Xylulose kinase (EC 2.7.1.17)
xylA
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD3064: Xylose isomerase (EC 5.3.1.5)
 
Clostridium hiranonis DSM 13275
Xylose isomerase (EC 5.3.1.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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