Regulog RbkR - Methanomicrobiales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Euryarchaeota |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Methanomicrobiales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Candidatus Methanoregula boonei 6A8 | 2 | 1 |
| Candidatus Methanosphaerula palustris E1-9c | 3 | 1 |
| Methanocorpusculum labreanum Z | 3 | 1 |
| Methanoculleus marisnigri JR1 | 2 | 1 |
| Methanospirillum hungatei JF-1 | 2 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| ribE |
|
|
*
Methanocorpusculum labreanum Z Site: position = -100 score = 4.61277 sequence = TAACTCATTTTTGATTGG Gene: Mlab_0397: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
|
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribB |
|
|
Gene: Mlab_0396: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
|
3,4-dihydroxy-2-butanone 4-phosphate synthase |
| ribH |
|
|
Gene: Mlab_0395: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 2. | ||||||
| rbkR |
*
Candidatus Methanoregula boonei 6A8 Site: position = -19 score = 5.55423 sequence = CATCTCAATTTTGATAAG Gene: Mboo_0159: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Candidatus Methanosphaerula palustris E1-9c Site: position = -17 score = 5.68931 sequence = CATCTCAATTTTGATATA Gene: Mpal_2512: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
Gene: Mlab_1629: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Methanoculleus marisnigri JR1 Site: position = -18 score = 5.36441 sequence = CATCTCAATTATGGTATA Gene: Memar_2359: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Methanospirillum hungatei JF-1 Site: position = -68 score = 5.03328 sequence = CATATCACTTATGATATC Site: position = -18 score = 5.09246 sequence = CATCTCACATATGATATC Gene: Mhun_1259: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
| ribB |
Gene: Mboo_0160: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
2
Candidatus Methanosphaerula palustris E1-9c Gene: Mpal_2514: 3,4-dihydroxy-2-butanone 4-phosphate synthase Gene: Mpal_2513: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
Gene: Memar_2358: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Gene: Mhun_1258: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |