Regulog RbkR - Thermoplasmatales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Euryarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Ferroplasma acidarmanus fer1 | 6 | 4 |
| Picrophilus torridus DSM 9790 | 6 | 4 |
| Thermoplasma acidophilum DSM 1728 | 1 | 1 |
| Thermoplasma volcanium GSS1 | 1 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| arfC |
*
Ferroplasma acidarmanus fer1 Site: position = -56 score = 5.20605 sequence = TAACTCATAATTAGGTAA Gene: Faci_03000281: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
*
Picrophilus torridus DSM 9790 Site: position = -71 score = 5.29708 sequence = TTACTTATAGATAAGTAA Site: position = -56 score = 5.63544 sequence = TAACTTAATTATAAGTAA Gene: PTO0710: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
|
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2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
| CRON 2. | |||||
| ribB |
*
Ferroplasma acidarmanus fer1 Site: position = -56 score = 5.48269 sequence = TAACTCATTTATAAGTAT Gene: Faci_03000282: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Picrophilus torridus DSM 9790 Site: position = -56 score = 5.59329 sequence = TTACTTAATAATGAGTAG Gene: PTO0712: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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3,4-dihydroxy-2-butanone 4-phosphate synthase |
| ribE |
Gene: Faci_03000283: Riboflavin synthase archaeal (EC 2.5.1.9) |
Gene: PTO0713: Riboflavin synthase archaeal (EC 2.5.1.9) |
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Riboflavin synthase archaeal (EC 2.5.1.9) |
| ribH |
Gene: Faci_03000284: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: PTO0714: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
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6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 3. | |||||
| pyrD |
*
Ferroplasma acidarmanus fer1 Site: position = -48 score = 5.20605 sequence = TTACCTAATTATGAGTTA Gene: Faci_03000280: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
*
Picrophilus torridus DSM 9790 Site: position = -109 score = 5.63544 sequence = TTACTTATAATTAAGTTA Site: position = -94 score = 5.29708 sequence = TTACTTATCTATAAGTAA Gene: PTO0711: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
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Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
| CRON 4. | |||||
| ribT |
*
Ferroplasma acidarmanus fer1 Site: position = -58 score = 5.53034 sequence = ATACTTAATTTTAAGTAA Gene: Faci_03001175: Predicted riboflavin transporter |
*
Picrophilus torridus DSM 9790 Site: position = -56 score = 5.2526 sequence = AAACTCAAAAATAAGTAG Gene: PTO1251: Predicted riboflavin transporter |
*
Thermoplasma acidophilum DSM 1728 Site: position = -58 score = 4.66951 sequence = CTACTAATTCACGAGTAA Gene: Ta1287: Predicted riboflavin transporter |
*
Thermoplasma volcanium GSS1 Site: position = -38 score = 4.21848 sequence = TTACTCAAATTTTATATA Site: position = -56 score = 5.42296 sequence = TTACTAATATATGAGTAT Gene: TVN0303: Predicted riboflavin transporter |
Predicted riboflavin transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |