Regulog NrdR - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 30 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By trascription factor - NrdR
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	5	2
Staphylococcus capitis SK14	5	2
Staphylococcus epidermidis ATCC 12228	5	2
Staphylococcus carnosus subsp. carnosus TM300	5	2
Staphylococcus haemolyticus JCSC1435	3	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	5	2
Macrococcus caseolyticus JCSC5402	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
nrdI	* Staphylococcus aureus subsp. aureus N315 Site: position = -212 score = 4.93941 sequence = ATACTACATATAGTGA Site: position = -364 score = 5.72789 sequence = ACACAATATCTTGTGT Site: position = -396 score = 4.83462 sequence = ACACATAATATAGTGT Gene: SA0685: NrdI protein involved in ribonucleotide reduction	* Staphylococcus capitis SK14 Site: position = -197 score = 4.67661 sequence = GTACTATATGTAGTGG Site: position = -350 score = 6.10881 sequence = ACACTATATATAGTGT Site: position = -382 score = 4.71883 sequence = ACACAGAATATAGTAT Gene: STACA0001_0298: NrdI protein involved in ribonucleotide reduction	* Staphylococcus epidermidis ATCC 12228 Site: position = -366 score = 4.71883 sequence = ACACAGAATATAGTAT Site: position = -334 score = 6.10881 sequence = ACACTATATATAGTGT Site: position = -182 score = 5.55722 sequence = CCACTATATATTGTGG Gene: SE0512: NrdI protein involved in ribonucleotide reduction	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -433 score = 5.20653 sequence = ACACTATATGTTGTGG Site: position = -192 score = 5.20653 sequence = CCACAATATGTAGTGT Gene: Sca_0378: NrdI protein involved in ribonucleotide reduction	* Staphylococcus haemolyticus JCSC1435 Site: position = -360 score = 4.71883 sequence = ACACAGAATATAGTAT Site: position = -328 score = 4.30426 sequence = CCACAACATGTTGTGG Site: position = -176 score = 4.61903 sequence = ACACTACATGTAGTGG Gene: SH2163: NrdI protein involved in ribonucleotide reductase function	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -322 score = 4.71883 sequence = ACACATAATATAGTAT Site: position = -290 score = 6.05683 sequence = ACACAATATATTGTGT Site: position = -137 score = 5.3799 sequence = TCACTATATATTGTGG Gene: SSP1987: NrdI protein involved in ribonucleotide reduction	* Macrococcus caseolyticus JCSC5402 Site: position = -150 score = 5.82002 sequence = CCACTATATATTGTGT Gene: MCCL_0482: NrdI protein involved in ribonucleotide reduction	NrdI protein involved in ribonucleotide reduction
nrdE	Staphylococcus aureus subsp. aureus N315 Gene: SA0686: ribonucleotide-diphosphate reductase alpha subunit	Staphylococcus capitis SK14 Gene: STACA0001_0297: ribonucleotide-diphosphate reductase alpha subunit	Staphylococcus epidermidis ATCC 12228 Gene: SE0513: ribonucleotide-diphosphate reductase alpha subunit	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0379: ribonucleotide-diphosphate reductase alpha subunit	Staphylococcus haemolyticus JCSC1435 Gene: SH2162: ribonucleotide-diphosphate reductase alpha subunit	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1986: ribonucleotide-diphosphate reductase alpha subunit	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0483: ribonucleotide-diphosphate reductase alpha subunit	ribonucleotide-diphosphate reductase alpha subunit
nrdF	Staphylococcus aureus subsp. aureus N315 Gene: SA0687: ribonucleotide-diphosphate reductase beta subunit	Staphylococcus capitis SK14 Gene: STACA0001_0296: ribonucleotide-diphosphate reductase beta subunit	Staphylococcus epidermidis ATCC 12228 Gene: SE0514: ribonucleotide-diphosphate reductase beta subunit	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0380: ribonucleotide-diphosphate reductase beta subunit	Staphylococcus haemolyticus JCSC1435 Gene: SH2161: ribonucleotide-diphosphate reductase beta subunit	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1985: ribonucleotide-diphosphate reductase beta subunit	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0484: ribonucleotide-diphosphate reductase beta subunit	ribonucleotide-diphosphate reductase beta subunit

CRON 2.
nrdD	* Staphylococcus aureus subsp. aureus N315 Site: position = -26 score = 4.899 sequence = ACACAATATATAGGAA Site: position = -59 score = 5.73022 sequence = ATACTATATATAGTGG Gene: SA2410: anaerobic ribonucleoside-triphosphate reductase	* Staphylococcus capitis SK14 Site: position = -26 score = 4.42997 sequence = ATACCATATATAGAAA Site: position = -58 score = 5.99302 sequence = ATACTATATATAGTGT Gene: STACA0001_1801: anaerobic ribonucleoside-triphosphate reductase	* Staphylococcus epidermidis ATCC 12228 Site: position = -58 score = 5.87724 sequence = ATACTATATATAGTAT Site: position = -26 score = 5.04077 sequence = ACACTATATATAGCGA Gene: SE2172: anaerobic ribonucleoside-triphosphate reductase	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -64 score = 5.26412 sequence = TTACTATATATTGTGG Site: position = -32 score = 5.52692 sequence = ACACAATATATAGTAA Gene: Sca_1845: anaerobic ribonucleoside-triphosphate reductase	Staphylococcus haemolyticus JCSC1435	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -60 score = 6.08282 sequence = ACACAATATATAGTGT Site: position = -28 score = 4.95848 sequence = ATACTATATATAGAAA Gene: SSP0144: anaerobic ribonucleoside-triphosphate reductase	* Macrococcus caseolyticus JCSC5402 Site: position = -66 score = 4.94558 sequence = ACACCTTATATAGTGT Site: position = -35 score = 4.92499 sequence = ATACTATATATAGCGA Gene: MCCL_1815: anaerobic ribonucleoside-triphosphate reductase	anaerobic ribonucleoside-triphosphate reductase
nrdG	Staphylococcus aureus subsp. aureus N315 Gene: SA2409: anaerobic ribonucleoside-triphosphate reductase activating protein	Staphylococcus capitis SK14 Gene: STACA0001_1800: anaerobic ribonucleoside-triphosphate reductase activating protein	Staphylococcus epidermidis ATCC 12228 Gene: SE2171: anaerobic ribonucleoside-triphosphate reductase activating protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1844: anaerobic ribonucleoside-triphosphate reductase activating protein	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0145: anaerobic ribonucleoside-triphosphate reductase activating protein	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1816: anaerobic ribonucleoside-triphosphate reductase activating protein	anaerobic ribonucleoside-triphosphate reductase activating protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --