Regulog NrdR - Staphylococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 5 | 2 |
| Staphylococcus capitis SK14 | 5 | 2 |
| Staphylococcus epidermidis ATCC 12228 | 5 | 2 |
| Staphylococcus carnosus subsp. carnosus TM300 | 5 | 2 |
| Staphylococcus haemolyticus JCSC1435 | 3 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 5 | 2 |
| Macrococcus caseolyticus JCSC5402 | 5 | 2 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| nrdI |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -212 score = 4.93941 sequence = ATACTACATATAGTGA Site: position = -364 score = 5.72789 sequence = ACACAATATCTTGTGT Site: position = -396 score = 4.83462 sequence = ACACATAATATAGTGT Gene: SA0685: NrdI protein involved in ribonucleotide reduction |
*
Staphylococcus capitis SK14 Site: position = -197 score = 4.67661 sequence = GTACTATATGTAGTGG Site: position = -350 score = 6.10881 sequence = ACACTATATATAGTGT Site: position = -382 score = 4.71883 sequence = ACACAGAATATAGTAT Gene: STACA0001_0298: NrdI protein involved in ribonucleotide reduction |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -366 score = 4.71883 sequence = ACACAGAATATAGTAT Site: position = -334 score = 6.10881 sequence = ACACTATATATAGTGT Site: position = -182 score = 5.55722 sequence = CCACTATATATTGTGG Gene: SE0512: NrdI protein involved in ribonucleotide reduction |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -433 score = 5.20653 sequence = ACACTATATGTTGTGG Site: position = -192 score = 5.20653 sequence = CCACAATATGTAGTGT Gene: Sca_0378: NrdI protein involved in ribonucleotide reduction |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -360 score = 4.71883 sequence = ACACAGAATATAGTAT Site: position = -328 score = 4.30426 sequence = CCACAACATGTTGTGG Site: position = -176 score = 4.61903 sequence = ACACTACATGTAGTGG Gene: SH2163: NrdI protein involved in ribonucleotide reductase function |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -322 score = 4.71883 sequence = ACACATAATATAGTAT Site: position = -290 score = 6.05683 sequence = ACACAATATATTGTGT Site: position = -137 score = 5.3799 sequence = TCACTATATATTGTGG Gene: SSP1987: NrdI protein involved in ribonucleotide reduction |
*
Macrococcus caseolyticus JCSC5402 Site: position = -150 score = 5.82002 sequence = CCACTATATATTGTGT Gene: MCCL_0482: NrdI protein involved in ribonucleotide reduction |
NrdI protein involved in ribonucleotide reduction |
| nrdE |
Gene: SA0686: ribonucleotide-diphosphate reductase alpha subunit |
Gene: STACA0001_0297: ribonucleotide-diphosphate reductase alpha subunit |
Gene: SE0513: ribonucleotide-diphosphate reductase alpha subunit |
Gene: Sca_0379: ribonucleotide-diphosphate reductase alpha subunit |
Gene: SH2162: ribonucleotide-diphosphate reductase alpha subunit |
Gene: SSP1986: ribonucleotide-diphosphate reductase alpha subunit |
Gene: MCCL_0483: ribonucleotide-diphosphate reductase alpha subunit |
ribonucleotide-diphosphate reductase alpha subunit |
| nrdF |
Gene: SA0687: ribonucleotide-diphosphate reductase beta subunit |
Gene: STACA0001_0296: ribonucleotide-diphosphate reductase beta subunit |
Gene: SE0514: ribonucleotide-diphosphate reductase beta subunit |
Gene: Sca_0380: ribonucleotide-diphosphate reductase beta subunit |
Gene: SH2161: ribonucleotide-diphosphate reductase beta subunit |
Gene: SSP1985: ribonucleotide-diphosphate reductase beta subunit |
Gene: MCCL_0484: ribonucleotide-diphosphate reductase beta subunit |
ribonucleotide-diphosphate reductase beta subunit |
| CRON 2. | ||||||||
| nrdD |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -26 score = 4.899 sequence = ACACAATATATAGGAA Site: position = -59 score = 5.73022 sequence = ATACTATATATAGTGG Gene: SA2410: anaerobic ribonucleoside-triphosphate reductase |
*
Staphylococcus capitis SK14 Site: position = -26 score = 4.42997 sequence = ATACCATATATAGAAA Site: position = -58 score = 5.99302 sequence = ATACTATATATAGTGT Gene: STACA0001_1801: anaerobic ribonucleoside-triphosphate reductase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -58 score = 5.87724 sequence = ATACTATATATAGTAT Site: position = -26 score = 5.04077 sequence = ACACTATATATAGCGA Gene: SE2172: anaerobic ribonucleoside-triphosphate reductase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -64 score = 5.26412 sequence = TTACTATATATTGTGG Site: position = -32 score = 5.52692 sequence = ACACAATATATAGTAA Gene: Sca_1845: anaerobic ribonucleoside-triphosphate reductase |
|
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -60 score = 6.08282 sequence = ACACAATATATAGTGT Site: position = -28 score = 4.95848 sequence = ATACTATATATAGAAA Gene: SSP0144: anaerobic ribonucleoside-triphosphate reductase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -66 score = 4.94558 sequence = ACACCTTATATAGTGT Site: position = -35 score = 4.92499 sequence = ATACTATATATAGCGA Gene: MCCL_1815: anaerobic ribonucleoside-triphosphate reductase |
anaerobic ribonucleoside-triphosphate reductase |
| nrdG |
Gene: SA2409: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: STACA0001_1800: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: SE2171: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: Sca_1844: anaerobic ribonucleoside-triphosphate reductase activating protein |
|
Gene: SSP0145: anaerobic ribonucleoside-triphosphate reductase activating protein |
Gene: MCCL_1816: anaerobic ribonucleoside-triphosphate reductase activating protein |
anaerobic ribonucleoside-triphosphate reductase activating protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |