Regulog RbkR - Archaeoglobales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Euryarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Archaeoglobales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Archaeoglobus fulgidus DSM 4304 | 2 | 1 |
| Archaeoglobus profundus DSM 5631 | 3 | 2 |
| Ferroglobus placidus DSM 10642 | 3 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| ribBA |
Gene: AF0484: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
*
Archaeoglobus profundus DSM 5631 Site: position = -49 score = 6.25704 sequence = TTTGAGATATATCTCAAA Gene: Arcpr_1140: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
*
Ferroglobus placidus DSM 10642 Site: position = 12 score = 6.02434 sequence = TTTGAGAAAAATCTCAAA Gene: Ferp_1619: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| CRON 2. | ||||
| rbkR |
*
Archaeoglobus fulgidus DSM 4304 Site: position = 30 score = 5.65622 sequence = TTTGAGGTGCTTCTCATA Gene: AF2106: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Archaeoglobus profundus DSM 5631 Site: position = -24 score = 5.22174 sequence = CTTGAGAATCATCTCACG Gene: Arcpr_1275: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
*
Ferroglobus placidus DSM 10642 Site: position = -27 score = 5.63611 sequence = TCTGAGAAGCATCTCATT Gene: Ferp_0920: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase |
| ribB |
Gene: AF2107: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Gene: Arcpr_1274: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Gene: Ferp_0919: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |