Regulog CblR - Sulfolobales
| Regulator type: | Transcription factor |
| Regulator family: | |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | |
| Phylum: | Crenarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sulfolobales
- By trascription factor - CblR
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Metallosphaera sedula DSM 5348 | 11 | 6 |
| Sulfolobus tokodaii str. 7 | 10 | 6 |
| Sulfolobus solfataricus P2 | 13 | 4 |
| Sulfolobus islandicus Y.N.15.51 | 13 | 4 |
| Sulfolobus acidocaldarius DSM 639 | 11 | 5 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| btuF |
*
Metallosphaera sedula DSM 5348 Site: position = -1 score = 6.4987 sequence = TATGGATAGCCTATCCATC Gene: Msed_0807: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Sulfolobus tokodaii str. 7 Site: position = -64 score = 4.94422 sequence = TTAGGATAACTTAACCATA Site: position = -1 score = 5.71788 sequence = TATGGATGACTTATCCATA Gene: ST0840: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Sulfolobus solfataricus P2 Site: position = -23 score = 6.50944 sequence = TTTGGATAGTCTATCCAGA Gene: SSO0485: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Sulfolobus islandicus Y.N.15.51 Site: position = -23 score = 6.50944 sequence = TTTGGATAGTCTATCCAGA Gene: YN1551_1191: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -24 score = 5.78266 sequence = TATGGATAGCCTATCCTAC Gene: Saci_1220: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
Gene: Msed_0806: Vitamin B12 ABC transporter, permease component BtuC |
*
Sulfolobus tokodaii str. 7 Site: position = -85 score = 5.71788 sequence = TATGGATAAGTCATCCATA Site: position = -22 score = 4.94422 sequence = TATGGTTAAGTTATCCTAA Gene: ST0841: Vitamin B12 ABC transporter, permease component BtuC |
Gene: SSO0486: Vitamin B12 ABC transporter, permease component BtuC |
Gene: YN1551_1192: Vitamin B12 ABC transporter, permease component BtuC |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -24 score = 6.16447 sequence = TATGGATAAGCTATCCACA Gene: Saci_1221: Vitamin B12 ABC transporter, permease component BtuC |
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
Gene: Msed_0805: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: ST0842: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: SSO0487: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: YN1551_1193: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Saci_1222: Vitamin B12 ABC transporter, ATPase component BtuD |
Vitamin B12 ABC transporter, ATPase component BtuD |
| CRON 2. | ||||||
| cobN |
*
Metallosphaera sedula DSM 5348 Site: position = -20 score = 5.81713 sequence = TATGGATAGGCTAACCAGG Gene: Msed_2089: CobN component of cobalt chelatase involved in B12 biosynthesis |
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CobN component of cobalt chelatase involved in B12 biosynthesis |
| chlID |
Gene: Msed_2088: ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis |
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ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis |
| CRON 3. | ||||||
| hoxN |
*
Metallosphaera sedula DSM 5348 Site: position = -23 score = 6.42953 sequence = TATGGATAGCCTATCCAAC Gene: Msed_1305: HoxN/HupN/NixA family cobalt transporter |
*
Sulfolobus tokodaii str. 7 Site: position = 20 score = 6.06065 sequence = TATGGATAACTTATCCAAA Site: position = 49 score = 5.79414 sequence = TGTGGATAACTTATCCAAA Gene: ST2443: HoxN/HupN/NixA family cobalt transporter |
*
Sulfolobus solfataricus P2 Site: position = 29 score = 6.09849 sequence = GATGGATAGACAATCCATA Gene: SSO1018: HoxN/HupN/NixA family cobalt transporter |
*
Sulfolobus islandicus Y.N.15.51 Site: position = 2 score = 6.09849 sequence = GATGGATAGACAATCCATA Gene: YN1551_1651: HoxN/HupN/NixA family cobalt transporter |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -23 score = 6.31821 sequence = ATTGGATAGGCTATCCATA Gene: Saci_2028: HoxN/HupN/NixA family cobalt transporter |
HoxN/HupN/NixA family cobalt transporter |
| CRON 4. | ||||||
| potE |
*
Metallosphaera sedula DSM 5348 Site: position = -1 score = 6.19342 sequence = TATGGCTAGCCTATCCAAA Gene: Msed_0588: Amino acid permease related protein |
*
Sulfolobus tokodaii str. 7 Site: position = 5 score = 5.71588 sequence = TATGGATAACTTATCCAAG Gene: ST2455: Amino acid permease related protein |
|
|
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Amino acid permease related protein |
| CRON 5. | ||||||
| cbiC |
|
*
Sulfolobus tokodaii str. 7 Site: position = -22 score = 5.94788 sequence = TTTGGATAAGCTATCCAAT Gene: ST1824: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
*
Sulfolobus solfataricus P2 Site: position = -1 score = 5.65151 sequence = TGTGGATAGACAATCCAAT Gene: SSO2308: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
*
Sulfolobus islandicus Y.N.15.51 Site: position = -1 score = 5.65151 sequence = TGTGGATAGACAATCCAAT Gene: YN1551_0113: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -1 score = 5.90954 sequence = TTTGGATACCCTATCCATC Gene: Saci_0399: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
| cbiH |
Gene: Msed_2092: Cobalt-precorrin-3b C17-methyltransferase |
Gene: ST1823: Cobalt-precorrin-3b C17-methyltransferase |
Gene: SSO2306: Cobalt-precorrin-3b C17-methyltransferase |
Gene: YN1551_0112: Cobalt-precorrin-3b C17-methyltransferase |
Gene: Saci_0398: Cobalt-precorrin-3b C17-methyltransferase |
Cobalt-precorrin-3b C17-methyltransferase |
| cbiD |
|
Gene: ST1821: Cobalt-precorrin-6 synthase, anaerobic |
Gene: SSO2305: Cobalt-precorrin-6 synthase, anaerobic |
Gene: YN1551_0111: Cobalt-precorrin-6 synthase, anaerobic |
Gene: Saci_0397: Cobalt-precorrin-6 synthase, anaerobic |
Cobalt-precorrin-6 synthase, anaerobic |
| cbiT |
Gene: Msed_2108: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: ST1819: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: SSO2303: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: YN1551_0110: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: Saci_0396: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
| cbiL |
Gene: Msed_0693: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: ST1817: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: SSO2301: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: YN1551_0109: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: Saci_0395: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| cbiF |
Gene: Msed_0694: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: ST1816: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: SSO2299: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: YN1551_0108: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: Saci_0394: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
| cbiG |
Gene: Msed_2091: Cobalamin biosynthesis protein CbiG |
Gene: ST1826: Cobalamin biosynthesis protein CbiG |
2
Sulfolobus solfataricus P2 Gene: SSO2297: Cobalamin biosynthesis protein CbiG Gene: SSO0129: Cobalamin biosynthesis protein CbiG |
2
Sulfolobus islandicus Y.N.15.51 Gene: YN1551_0798: Cobalamin biosynthesis protein CbiG Gene: YN1551_0107: Cobalamin biosynthesis protein CbiG |
Gene: Saci_0401: Cobalamin biosynthesis protein CbiG |
Cobalamin biosynthesis protein CbiG |
| cbiE |
|
Gene: ST1825: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: SSO2296: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: YN1551_0106: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: Saci_0400: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
| Msed_2090 |
*
Metallosphaera sedula DSM 5348 Site: position = -119 score = 5.81713 sequence = CCTGGTTAGCCTATCCATA Gene: Msed_2090: Signal peptidase, type IV - prepilin/preflagellin |
Gene: ST2258: Signal peptidase, type IV - prepilin/preflagellin |
Gene: SSO0131: Signal peptidase, type IV - prepilin/preflagellin |
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Signal peptidase, type IV - prepilin/preflagellin |
| CRON 6. | ||||||
| bluB |
*
Metallosphaera sedula DSM 5348 Site: position = -18 score = 5.71385 sequence = CCTGGATACTCTATCCATA Gene: Msed_1226: Cob(II)yrinic acid a,c-diamide reductase |
*
Sulfolobus tokodaii str. 7 Site: position = -1 score = 6.08621 sequence = TATGGATAACCTATCCATG Gene: ST0601: Cob(II)yrinic acid a,c-diamide reductase |
*
Sulfolobus solfataricus P2 Site: position = -22 score = 6.398 sequence = GCTGGATAGCCTATCCATA Gene: SSO2560: Cob(II)yrinic acid a,c-diamide reductase |
*
Sulfolobus islandicus Y.N.15.51 Site: position = -22 score = 6.5786 sequence = TCTGGATAGTCTATCCATA Gene: YN1551_3111: Cob(II)yrinic acid a,c-diamide reductase |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -18 score = 6.14469 sequence = GATGGATAATCTATCCATA Gene: Saci_0250: Cob(II)yrinic acid a,c-diamide reductase |
Cob(II)yrinic acid a,c-diamide reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |