Regulog PdxW2 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 2 | 1 |
| Pseudomonas entomophila L48 | 3 | 1 |
| Pseudomonas fluorescens Pf-5 | 3 | 1 |
| Pseudomonas mendocina ymp | 3 | 1 |
| Pseudomonas putida KT2440 | 3 | 1 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 3 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pdxO2 |
|
Gene: PA4182: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Pseudomonas entomophila L48 Site: position = -87 score = 14.142 sequence = ATTGGACCT-(15)-AATGGCTCT-(5)-AGAGCCAAT Gene: PSEEN5492: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Pseudomonas fluorescens Pf-5 Site: position = -88 score = 12.7822 sequence = ATTGGACCC-(15)-GATGGCTCT-(5)-CGAACCATT Gene: PFL_6149: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Pseudomonas mendocina ymp Site: position = -88 score = 13.1826 sequence = ATTGGCTCT-(15)-AATGGATCT-(5)-CAGGCCAAT Gene: Pmen_0131: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
*
Pseudomonas putida KT2440 Site: position = -86 score = 14.3879 sequence = ATTGGACCT-(15)-AATGGATCT-(5)-AGAACCAAT Gene: PP5343: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -87 score = 13.3076 sequence = ATTGGCTCT-(15)-AATGGATCT-(5)-CAGACCAAT Gene: PSPTO5505: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
| COG456 (RimI), PF00583 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -94 score = 13.998 sequence = ATTGGACCT-(15)-AATGGATCT-(5)-CGGACCATT Gene: PA5432: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: PSEEN5493: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: PFL_6150: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: Pmen_0132: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: PP5344: GCN5-related N-acetyltransferase (GNAT) domain |
|
Gene: PSPTO5506: GCN5-related N-acetyltransferase (GNAT) domain |
GCN5-related N-acetyltransferase (GNAT) domain |
| COG1670 (RimL), PF00583 |
|
Gene: PA5433: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: PSEEN5494: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: PFL_6151: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: Pmen_0133: GCN5-related N-acetyltransferase (GNAT) domain |
Gene: PP5345: GCN5-related N-acetyltransferase (GNAT) domain |
|
Gene: PSPTO5507: GCN5-related N-acetyltransferase (GNAT) domain |
GCN5-related N-acetyltransferase (GNAT) domain |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |