Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdxW2 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1 2 1
Pseudomonas entomophila L48 3 1
Pseudomonas fluorescens Pf-5 3 1
Pseudomonas mendocina ymp 3 1
Pseudomonas putida KT2440 3 1
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO2
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA4182: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Pseudomonas entomophila L48

Site:
position = -87
score = 14.142
sequence = ATTGGACCT-(15)-AATGGCTCT-(5)-AGAGCCAAT

Gene: PSEEN5492: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Pseudomonas fluorescens Pf-5

Site:
position = -88
score = 12.7822
sequence = ATTGGACCC-(15)-GATGGCTCT-(5)-CGAACCATT

Gene: PFL_6149: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Pseudomonas mendocina ymp

Site:
position = -88
score = 13.1826
sequence = ATTGGCTCT-(15)-AATGGATCT-(5)-CAGGCCAAT

Gene: Pmen_0131: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Pseudomonas putida KT2440

Site:
position = -86
score = 14.3879
sequence = ATTGGACCT-(15)-AATGGATCT-(5)-AGAACCAAT

Gene: PP5343: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -87
score = 13.3076
sequence = ATTGGCTCT-(15)-AATGGATCT-(5)-CAGACCAAT

Gene: PSPTO5505: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
COG456 (RimI), PF00583
 
Azotobacter vinelandii AvOP
*
Pseudomonas aeruginosa PAO1

Site:
position = -94
score = 13.998
sequence = ATTGGACCT-(15)-AATGGATCT-(5)-CGGACCATT

Gene: PA5432: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas entomophila L48

Gene: PSEEN5493: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas fluorescens Pf-5

Gene: PFL_6150: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas mendocina ymp

Gene: Pmen_0132: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas putida KT2440

Gene: PP5344: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO5506: GCN5-related N-acetyltransferase (GNAT) domain
GCN5-related N-acetyltransferase (GNAT) domain
COG1670 (RimL), PF00583
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA5433: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas entomophila L48

Gene: PSEEN5494: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas fluorescens Pf-5

Gene: PFL_6151: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas mendocina ymp

Gene: Pmen_0133: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas putida KT2440

Gene: PP5345: GCN5-related N-acetyltransferase (GNAT) domain
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO5507: GCN5-related N-acetyltransferase (GNAT) domain
GCN5-related N-acetyltransferase (GNAT) domain
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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