Regulog AouR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Arabinose oligosaccharide utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Arabinose oligosaccharide utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011	3	2
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	6	3
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	5	2
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
aouA	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -152 score = 4.22024 sequence = TGATGAAATGATTTTGAAAA Site: position = -274 score = 4.62708 sequence = ATATGAAACAGTTTTCGCAT Gene: BDP_1706: Arabinose oligosaccharide ABC transporter, sugar-binding protein	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -381 score = 4.41337 sequence = ATGCGAAAACTTTCGCAAAC Site: position = -153 score = 3.7964 sequence = TTTTGCAAAAACTTCCATGT Gene: BL0425: Arabinose oligosaccharide ABC transporter, sugar-binding protein	Gardnerella vaginalis 409-05	Arabinose oligosaccharide ABC transporter, sugar-binding protein
aouB	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_1705: Arabinose oligosaccharide ABC transporter, permease protein 1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0424: Arabinose oligosaccharide ABC transporter, permease protein 1	Gardnerella vaginalis 409-05	Arabinose oligosaccharide ABC transporter, permease protein 1
aouC	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_1704: Arabinose oligosaccharide ABC transporter, permease component 2	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0423: Arabinose oligosaccharide ABC transporter, permease component 2	Gardnerella vaginalis 409-05	Arabinose oligosaccharide ABC transporter, permease component 2
hypBA1	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -113 score = 5.30584 sequence = GGAAGGAAATATTTCCCAAC Gene: BLA_1513: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_02037: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185)	Bifidobacterium dentium Bd1 Gene: BDP_1703: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0422: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185)	Gardnerella vaginalis 409-05	Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185)
aouT	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1512: Arabinose oligosaccharide permease	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Arabinose oligosaccharide permease

CRON 2.
aouR	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -47 score = 5.30584 sequence = GTTGGGAAATATTTCCTTCC Gene: BLA_1514: Arabinose oligosaccharide utilization transcriptional regulator, LacI family	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -296 score = 4.22024 sequence = TTTTCAAAATCATTTCATCA Site: position = -174 score = 4.62708 sequence = ATGCGAAAACTGTTTCATAT Gene: BDP_1707: Arabinose oligosaccharide utilization transcriptional regulator, LacI family	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -124 score = 4.41337 sequence = GTTTGCGAAAGTTTTCGCAT Gene: BL0426: Arabinose oligosaccharide utilization transcriptional regulator, LacI family	Gardnerella vaginalis 409-05	Arabinose oligosaccharide utilization transcriptional regulator, LacI family

CRON 3.
hypBA2	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -257 score = 4.45808 sequence = AGGAGAAATATTTTTCATAT Site: position = -196 score = 4.15031 sequence = TTGTGAAAAAATTTCGCATC Gene: BDP_1701: Beta-L-arabinobiosidase (EC 3.2.1.187)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0421: Beta-L-arabinobiosidase (EC 3.2.1.187)	Gardnerella vaginalis 409-05	Beta-L-arabinobiosidase (EC 3.2.1.187)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AouR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --