Regulog AouR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Arabinose oligosaccharide utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By pathway - Arabinose oligosaccharide utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Bifidobacterium adolescentis ATCC 15703 | ||
| Bifidobacterium angulatum DSM 20098 | ||
| Bifidobacterium animalis subsp. lactis AD011 | 3 | 2 |
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 6 | 3 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 5 | 2 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| aouA |
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Bifidobacterium dentium Bd1 Site: position = -152 score = 4.22024 sequence = TGATGAAATGATTTTGAAAA Site: position = -274 score = 4.62708 sequence = ATATGAAACAGTTTTCGCAT Gene: BDP_1706: Arabinose oligosaccharide ABC transporter, sugar-binding protein |
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Bifidobacterium longum NCC2705 Site: position = -381 score = 4.41337 sequence = ATGCGAAAACTTTCGCAAAC Site: position = -153 score = 3.7964 sequence = TTTTGCAAAAACTTCCATGT Gene: BL0425: Arabinose oligosaccharide ABC transporter, sugar-binding protein |
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Arabinose oligosaccharide ABC transporter, sugar-binding protein |
| aouB |
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Gene: BDP_1705: Arabinose oligosaccharide ABC transporter, permease protein 1 |
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Gene: BL0424: Arabinose oligosaccharide ABC transporter, permease protein 1 |
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Arabinose oligosaccharide ABC transporter, permease protein 1 |
| aouC |
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Gene: BDP_1704: Arabinose oligosaccharide ABC transporter, permease component 2 |
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Gene: BL0423: Arabinose oligosaccharide ABC transporter, permease component 2 |
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Arabinose oligosaccharide ABC transporter, permease component 2 |
| hypBA1 |
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Bifidobacterium animalis subsp. lactis AD011 Site: position = -113 score = 5.30584 sequence = GGAAGGAAATATTTCCCAAC Gene: BLA_1513: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185) |
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Gene: BIFBRE_02037: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185) |
Gene: BDP_1703: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185) |
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Gene: BL0422: Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185) |
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Non-reducing end beta-L-arabinofuranosidase (EC 3.2.1.185) |
| aouT |
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Gene: BLA_1512: Arabinose oligosaccharide permease |
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Arabinose oligosaccharide permease |
| CRON 2. | |||||||||||
| aouR |
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Bifidobacterium animalis subsp. lactis AD011 Site: position = -47 score = 5.30584 sequence = GTTGGGAAATATTTCCTTCC Gene: BLA_1514: Arabinose oligosaccharide utilization transcriptional regulator, LacI family |
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Bifidobacterium dentium Bd1 Site: position = -296 score = 4.22024 sequence = TTTTCAAAATCATTTCATCA Site: position = -174 score = 4.62708 sequence = ATGCGAAAACTGTTTCATAT Gene: BDP_1707: Arabinose oligosaccharide utilization transcriptional regulator, LacI family |
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Bifidobacterium longum NCC2705 Site: position = -124 score = 4.41337 sequence = GTTTGCGAAAGTTTTCGCAT Gene: BL0426: Arabinose oligosaccharide utilization transcriptional regulator, LacI family |
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Arabinose oligosaccharide utilization transcriptional regulator, LacI family |
| CRON 3. | |||||||||||
| hypBA2 |
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Bifidobacterium dentium Bd1 Site: position = -257 score = 4.45808 sequence = AGGAGAAATATTTTTCATAT Site: position = -196 score = 4.15031 sequence = TTGTGAAAAAATTTCGCATC Gene: BDP_1701: Beta-L-arabinobiosidase (EC 3.2.1.187) |
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Gene: BL0421: Beta-L-arabinobiosidase (EC 3.2.1.187) |
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Beta-L-arabinobiosidase (EC 3.2.1.187) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |