Regulog UxuR1 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Galacturonate utilization
Effector:	Glucuronate; Galacturonate
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - GntR/Others
By effector - Glucuronate
By effector - Galacturonate
By pathway - Glucuronate utilization
By pathway - Galacturonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1	9	2
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Sulfitobacter sp. EE-36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
uxaC	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_09695: Uronate isomerase (EC 5.3.1.12)	Paracoccus denitrificans PD1222	* Rhodobacter sphaeroides 2.4.1 Site: position = -81 score = 8.45269 sequence = GCATACT-(1)-GCATATT Gene: RSP_0488: Uronate isomerase (EC 5.3.1.12)	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06469: Uronate isomerase (EC 5.3.1.12)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Uronate isomerase (EC 5.3.1.12)
uxuP	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_05598: TRAP-type hexuronate transport system, periplasmic component	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0487: TRAP-type hexuronate transport system, periplasmic component	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06474: TRAP-type hexuronate transport system, periplasmic component	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	TRAP-type hexuronate transport system, periplasmic component
uxuQ	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_05593: TRAP-type hexuronate transport system, small permease component	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0485: TRAP-type hexuronate transport system, small permease component	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06479: TRAP-type hexuronate transport system, small permease component	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	TRAP-type hexuronate transport system, small permease component
uxuM	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_05588: TRAP-type hexuronate transport system, large permease component	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0484: TRAP-type hexuronate transport system, large permease component	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06484: TRAP-type hexuronate transport system, large permease component	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	TRAP-type hexuronate transport system, large permease component
kdgF	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0483: Pectin degradation protein KdgF	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06489: Pectin degradation protein KdgF	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Pectin degradation protein KdgF
kduI	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0482: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06494: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0481: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06499: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
uxuB	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_09700: D-mannonate oxidoreductase (EC 1.1.1.57)	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0480: D-mannonate oxidoreductase (EC 1.1.1.57)	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_06504: D-mannonate oxidoreductase (EC 1.1.1.57)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	D-mannonate oxidoreductase (EC 1.1.1.57)

CRON 2.
uxuA	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_05678: Mannonate dehydratase (EC 4.2.1.8)	Paracoccus denitrificans PD1222 Gene: Pden_5061: Mannonate dehydratase (EC 4.2.1.8)	* Rhodobacter sphaeroides 2.4.1 Site: position = -44 score = 8.45269 sequence = GCATACT-(1)-GCATATT Site: position = -52 score = 12.2151 sequence = GCAAACT-(1)-GCATACT-(1)-GCATATT Gene: RSP_0773: Mannonate dehydratase (EC 4.2.1.8)	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO1723: Mannonate dehydratase (EC 4.2.1.8)	Sulfitobacter sp. EE-36	Mannonate dehydratase (EC 4.2.1.8)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR1 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --