Regulog UxuR1 - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | Glucuronate; Galacturonate |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - GntR/Others
- By effector - Glucuronate
- By effector - Galacturonate
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | ||
| Rhodobacter sphaeroides 2.4.1 | 9 | 2 |
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| uxaC |
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Gene: OG2516_09695: Uronate isomerase (EC 5.3.1.12) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -81 score = 8.45269 sequence = GCATACT-(1)-GCATATT Gene: RSP_0488: Uronate isomerase (EC 5.3.1.12) |
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Gene: MED193_06469: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| uxuP |
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Gene: OG2516_05598: TRAP-type hexuronate transport system, periplasmic component |
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Gene: RSP_0487: TRAP-type hexuronate transport system, periplasmic component |
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Gene: MED193_06474: TRAP-type hexuronate transport system, periplasmic component |
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TRAP-type hexuronate transport system, periplasmic component |
| uxuQ |
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Gene: OG2516_05593: TRAP-type hexuronate transport system, small permease component |
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Gene: RSP_0485: TRAP-type hexuronate transport system, small permease component |
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Gene: MED193_06479: TRAP-type hexuronate transport system, small permease component |
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TRAP-type hexuronate transport system, small permease component |
| uxuM |
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Gene: OG2516_05588: TRAP-type hexuronate transport system, large permease component |
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Gene: RSP_0484: TRAP-type hexuronate transport system, large permease component |
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Gene: MED193_06484: TRAP-type hexuronate transport system, large permease component |
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TRAP-type hexuronate transport system, large permease component |
| kdgF |
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Gene: RSP_0483: Pectin degradation protein KdgF |
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Gene: MED193_06489: Pectin degradation protein KdgF |
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Pectin degradation protein KdgF |
| kduI |
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Gene: RSP_0482: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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Gene: MED193_06494: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
| kduD |
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Gene: RSP_0481: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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Gene: MED193_06499: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
| uxuB |
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Gene: OG2516_09700: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: RSP_0480: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: MED193_06504: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| CRON 2. | ||||||||||||||||
| uxuA |
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Gene: OG2516_05678: Mannonate dehydratase (EC 4.2.1.8) |
Gene: Pden_5061: Mannonate dehydratase (EC 4.2.1.8) |
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Rhodobacter sphaeroides 2.4.1 Site: position = -44 score = 8.45269 sequence = GCATACT-(1)-GCATATT Site: position = -52 score = 12.2151 sequence = GCAAACT-(1)-GCATACT-(1)-GCATATT Gene: RSP_0773: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: SPO1723: Mannonate dehydratase (EC 4.2.1.8) |
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Mannonate dehydratase (EC 4.2.1.8) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |