Regulog FucR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Fucose utilization
Effector:	Fucose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Fucose
By pathway - Fucose utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697	5	2
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213	2	2
Bifidobacterium dentium Bd1
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
fucD	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -87 score = 5.29717 sequence = AAAAATTTTCGTAATCGGGT Gene: Blon_2309: L-fuconate dehydratase (EC 4.2.1.68)	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = -88 score = 5.00083 sequence = AAAAATTTTCGCAAATAGGC Gene: BIFBRE_00138: L-fuconate dehydratase (EC 4.2.1.68)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	L-fuconate dehydratase (EC 4.2.1.68)
fucO	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2308: Potentail L-fucose dehydrogenase	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00140: Potentail L-fucose dehydrogenase	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Potentail L-fucose dehydrogenase
fucP	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2307: Potential L-fucose permease	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00141: Potential L-fucose permease	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Potential L-fucose permease
fucL	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2306: Potential L-fucono-1,5-lactonase	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00143: Potential L-fucono-1,5-lactonase	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Potential L-fucono-1,5-lactonase

CRON 2.
fucR	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -112 score = 5.29717 sequence = ACCCGATTACGAAAATTTTT Gene: Blon_2310: Transcriptional regulator of L-fucose utilization, LacI family	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = 79 score = 5.00083 sequence = GCCTATTTGCGAAAATTTTT Gene: BIFBRE_00139: Transcriptional regulator of L-fucose utilization, LacI family	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Transcriptional regulator of L-fucose utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FucR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --