Regulog RbsR3 - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Ribonucleoside utilization |
| Effector: | Ribose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By effector - Ribose
- By pathway - Ribonucleoside utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Bifidobacterium adolescentis ATCC 15703 | 2 | 1 |
| Bifidobacterium angulatum DSM 20098 | 3 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | 3 | 1 |
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 6 | 4 |
| Bifidobacterium gallicum DSM 20093 | 5 | 4 |
| Bifidobacterium longum NCC2705 | ||
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| nupC |
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Bifidobacterium gallicum DSM 20093 Site: position = -187 score = 6.26808 sequence = ATGCTAAAACGTTTTATTAT Gene: BIFGAL_01002: Ribonucleoside permease |
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Ribonucleoside permease |
| CRON 2. | |||||||||||
| rihC |
Gene: Blon_2007: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
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Bifidobacterium adolescentis ATCC 15703 Site: position = -31 score = 6.8518 sequence = TTGATAAAACGTTTTATCAT Gene: BAD_1486: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
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Bifidobacterium angulatum DSM 20098 Site: position = -92 score = 6.80197 sequence = ATGATAAAACGTTTTATCAT Gene: BIFANG_00967: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
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Bifidobacterium animalis subsp. lactis AD011 Site: position = -69 score = 6.22312 sequence = TTGGTAAAACGTTTTATCAC Gene: BLA_0696: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
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Bifidobacterium dentium Bd1 Site: position = -135 score = 6.44945 sequence = ATGATAAAACGCTTTATCAT Gene: BDP_2026: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
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Bifidobacterium gallicum DSM 20093 Site: position = -94 score = 6.90163 sequence = TTGATAAAACGTTTTATCAA Gene: BIFGAL_01915: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
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Gene: HMPREF0424_0577: Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
Non-specific ribonucleoside hydrolase (EC 3.2.-.-) |
| iunT |
Gene: Blon_2006: Predicted pyrimidine nucleoside transporter, MFS family |
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Gene: BIFANG_00968: Predicted pyrimidine nucleoside transporter, MFS family |
Gene: BLA_0695: Predicted pyrimidine nucleoside transporter, MFS family |
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Gene: BDP_2025: Predicted pyrimidine nucleoside transporter, MFS family |
Gene: BIFGAL_00995: Predicted pyrimidine nucleoside transporter, MFS family |
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Gene: HMPREF0424_0578: Predicted pyrimidine nucleoside transporter, MFS family |
Predicted pyrimidine nucleoside transporter, MFS family |
| rbsK |
Gene: Blon_0640: Ribokinase (EC 2.7.1.15) |
Gene: BAD_1485: Ribokinase (EC 2.7.1.15) |
Gene: BIFANG_00969: Ribokinase (EC 2.7.1.15) |
Gene: BLA_0694: Ribokinase (EC 2.7.1.15) |
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Gene: BIFBRE_00476: Ribokinase (EC 2.7.1.15) |
Gene: BDP_2024: Ribokinase (EC 2.7.1.15) |
Gene: BIFGAL_01916: Ribokinase (EC 2.7.1.15) |
Gene: BL1772: Ribokinase (EC 2.7.1.15) |
Gene: HMPREF0424_1334: Ribokinase (EC 2.7.1.15) |
Ribokinase (EC 2.7.1.15) |
| CRON 3. | |||||||||||
| rbsR3 |
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Gene: BAD_1487: Transcriptional regulator of ribonucleside utilization, LacI family |
Gene: BIFANG_00965: Transcriptional regulator of ribonucleside utilization, LacI family |
Gene: BLA_0697: Transcriptional regulator of ribonucleside utilization, LacI family |
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*3
Bifidobacterium dentium Bd1 Gene: BDP_2027: Transcriptional regulator of ribonucleside utilization, LacI family Gene: BDP_0170: Transcriptional regulator of ribonucleside utilization, LacI family Site: position = -103 score = 6.28683 sequence = TTGATAAATCGATTTGGCAA Gene: BDP_1919: Transcriptional regulator of ribonucleside utilization, LacI family |
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Bifidobacterium gallicum DSM 20093 Site: position = -163 score = 5.51077 sequence = ATGGTAAATCGTTTTATTTT Gene: BIFGAL_01913: Transcriptional regulator of ribonucleside utilization, LacI family |
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Transcriptional regulator of ribonucleside utilization, LacI family |
| CRON 4. | |||||||||||
| iunT |
Gene: Blon_0639: Predicted inosine-uridine transporter, MFS family |
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Gene: BLA_0638: Predicted inosine-uridine transporter, MFS family |
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Bifidobacterium dentium Bd1 Site: position = -131 score = 5.8322 sequence = TTGCCAAATCGATTTATCTT Gene: BDP_1918: Predicted inosine-uridine transporter, MFS family |
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Gene: HMPREF0424_0320: Predicted inosine-uridine transporter, MFS family |
Predicted inosine-uridine transporter, MFS family |
| iunH |
Gene: Blon_0638: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
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Gene: BLA_0639: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
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Bifidobacterium dentium Bd1 Site: position = -35 score = 6.28683 sequence = TTGCCAAATCGATTTATCAA Gene: BDP_1920: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
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Bifidobacterium gallicum DSM 20093 Site: position = -47 score = 5.87037 sequence = TTGCAAAAACGTTTTAGCGA Gene: BIFGAL_01080: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
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Gene: HMPREF0424_0319: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |