Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog RbsR3 - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Ribonucleoside utilization
Effector: Ribose
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703 2 1
Bifidobacterium angulatum DSM 20098 3 1
Bifidobacterium animalis subsp. lactis AD011 3 1
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1 6 4
Bifidobacterium gallicum DSM 20093 5 4
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nupC
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1
*
Bifidobacterium gallicum DSM 20093

Site:
position = -187
score = 6.26808
sequence = ATGCTAAAACGTTTTATTAT

Gene: BIFGAL_01002: Ribonucleoside permease
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Ribonucleoside permease
 
CRON 2.
rihC
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2007: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -31
score = 6.8518
sequence = TTGATAAAACGTTTTATCAT

Gene: BAD_1486: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -92
score = 6.80197
sequence = ATGATAAAACGTTTTATCAT

Gene: BIFANG_00967: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -69
score = 6.22312
sequence = TTGGTAAAACGTTTTATCAC

Gene: BLA_0696: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -135
score = 6.44945
sequence = ATGATAAAACGCTTTATCAT

Gene: BDP_2026: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -94
score = 6.90163
sequence = TTGATAAAACGTTTTATCAA

Gene: BIFGAL_01915: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0577: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
iunT
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2006: Predicted pyrimidine nucleoside transporter, MFS family
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00968: Predicted pyrimidine nucleoside transporter, MFS family
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0695: Predicted pyrimidine nucleoside transporter, MFS family
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1

Gene: BDP_2025: Predicted pyrimidine nucleoside transporter, MFS family
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00995: Predicted pyrimidine nucleoside transporter, MFS family
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0578: Predicted pyrimidine nucleoside transporter, MFS family
Predicted pyrimidine nucleoside transporter, MFS family
rbsK
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0640: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1485: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00969: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0694: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00476: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium dentium Bd1

Gene: BDP_2024: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01916: Ribokinase (EC 2.7.1.15)
 
Bifidobacterium longum NCC2705

Gene: BL1772: Ribokinase (EC 2.7.1.15)
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_1334: Ribokinase (EC 2.7.1.15)
Ribokinase (EC 2.7.1.15)
 
CRON 3.
rbsR3
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_1487: Transcriptional regulator of ribonucleside utilization, LacI family
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00965: Transcriptional regulator of ribonucleside utilization, LacI family
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0697: Transcriptional regulator of ribonucleside utilization, LacI family
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*3
Bifidobacterium dentium Bd1

Gene: BDP_2027: Transcriptional regulator of ribonucleside utilization, LacI family

Gene: BDP_0170: Transcriptional regulator of ribonucleside utilization, LacI family

Site:
position = -103
score = 6.28683
sequence = TTGATAAATCGATTTGGCAA

Gene: BDP_1919: Transcriptional regulator of ribonucleside utilization, LacI family
*
Bifidobacterium gallicum DSM 20093

Site:
position = -163
score = 5.51077
sequence = ATGGTAAATCGTTTTATTTT

Gene: BIFGAL_01913: Transcriptional regulator of ribonucleside utilization, LacI family
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05
Transcriptional regulator of ribonucleside utilization, LacI family
 
CRON 4.
iunT
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0639: Predicted inosine-uridine transporter, MFS family
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0638: Predicted inosine-uridine transporter, MFS family
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -131
score = 5.8322
sequence = TTGCCAAATCGATTTATCTT

Gene: BDP_1918: Predicted inosine-uridine transporter, MFS family
 
Bifidobacterium gallicum DSM 20093
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0320: Predicted inosine-uridine transporter, MFS family
Predicted inosine-uridine transporter, MFS family
iunH
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_0638: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0639: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -35
score = 6.28683
sequence = TTGCCAAATCGATTTATCAA

Gene: BDP_1920: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -47
score = 5.87037
sequence = TTGCAAAAACGTTTTAGCGA

Gene: BIFGAL_01080: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
 
Bifidobacterium longum NCC2705
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0319: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD