Regulog RbsR3 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Ribonucleoside utilization
Effector:	Ribose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Ribose
By pathway - Ribonucleoside utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703	2	1
Bifidobacterium angulatum DSM 20098	3	1
Bifidobacterium animalis subsp. lactis AD011	3	1
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	6	4
Bifidobacterium gallicum DSM 20093	5	4
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
nupC	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	* Bifidobacterium gallicum DSM 20093 Site: position = -187 score = 6.26808 sequence = ATGCTAAAACGTTTTATTAT Gene: BIFGAL_01002: Ribonucleoside permease	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Ribonucleoside permease

CRON 2.
rihC	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2007: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	* Bifidobacterium adolescentis ATCC 15703 Site: position = -31 score = 6.8518 sequence = TTGATAAAACGTTTTATCAT Gene: BAD_1486: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	* Bifidobacterium angulatum DSM 20098 Site: position = -92 score = 6.80197 sequence = ATGATAAAACGTTTTATCAT Gene: BIFANG_00967: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -69 score = 6.22312 sequence = TTGGTAAAACGTTTTATCAC Gene: BLA_0696: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -135 score = 6.44945 sequence = ATGATAAAACGCTTTATCAT Gene: BDP_2026: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	* Bifidobacterium gallicum DSM 20093 Site: position = -94 score = 6.90163 sequence = TTGATAAAACGTTTTATCAA Gene: BIFGAL_01915: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0577: Non-specific ribonucleoside hydrolase (EC 3.2.-.-)	Non-specific ribonucleoside hydrolase (EC 3.2.-.-)
iunT	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2006: Predicted pyrimidine nucleoside transporter, MFS family	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00968: Predicted pyrimidine nucleoside transporter, MFS family	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0695: Predicted pyrimidine nucleoside transporter, MFS family	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2025: Predicted pyrimidine nucleoside transporter, MFS family	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00995: Predicted pyrimidine nucleoside transporter, MFS family	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0578: Predicted pyrimidine nucleoside transporter, MFS family	Predicted pyrimidine nucleoside transporter, MFS family
rbsK	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0640: Ribokinase (EC 2.7.1.15)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1485: Ribokinase (EC 2.7.1.15)	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00969: Ribokinase (EC 2.7.1.15)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0694: Ribokinase (EC 2.7.1.15)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00476: Ribokinase (EC 2.7.1.15)	Bifidobacterium dentium Bd1 Gene: BDP_2024: Ribokinase (EC 2.7.1.15)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_01916: Ribokinase (EC 2.7.1.15)	Bifidobacterium longum NCC2705 Gene: BL1772: Ribokinase (EC 2.7.1.15)	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1334: Ribokinase (EC 2.7.1.15)	Ribokinase (EC 2.7.1.15)

CRON 3.
rbsR3	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1487: Transcriptional regulator of ribonucleside utilization, LacI family	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00965: Transcriptional regulator of ribonucleside utilization, LacI family	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0697: Transcriptional regulator of ribonucleside utilization, LacI family	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	3 Bifidobacterium dentium Bd1* Gene: BDP_2027: Transcriptional regulator of ribonucleside utilization, LacI family Gene: BDP_0170: Transcriptional regulator of ribonucleside utilization, LacI family Site: position = -103 score = 6.28683 sequence = TTGATAAATCGATTTGGCAA Gene: BDP_1919: Transcriptional regulator of ribonucleside utilization, LacI family	* Bifidobacterium gallicum DSM 20093 Site: position = -163 score = 5.51077 sequence = ATGGTAAATCGTTTTATTTT Gene: BIFGAL_01913: Transcriptional regulator of ribonucleside utilization, LacI family	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Transcriptional regulator of ribonucleside utilization, LacI family

CRON 4.
iunT	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0639: Predicted inosine-uridine transporter, MFS family	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0638: Predicted inosine-uridine transporter, MFS family	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -131 score = 5.8322 sequence = TTGCCAAATCGATTTATCTT Gene: BDP_1918: Predicted inosine-uridine transporter, MFS family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0320: Predicted inosine-uridine transporter, MFS family	Predicted inosine-uridine transporter, MFS family
iunH	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0638: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0639: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -35 score = 6.28683 sequence = TTGCCAAATCGATTTATCAA Gene: BDP_1920: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	* Bifidobacterium gallicum DSM 20093 Site: position = -47 score = 5.87037 sequence = TTGCAAAAACGTTTTAGCGA Gene: BIFGAL_01080: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0319: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR3 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --