Regulog NrdR - Thermoanaerobacterales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Anaerocellum thermophilum DSM 6725 | 1 | 1 |
| Caldicellulosiruptor saccharolyticus DSM 8903 | 1 | 1 |
| Carboxydothermus hydrogenoformans Z-2901 | 3 | 1 |
| Moorella thermoacetica ATCC 39073 | ||
| Thermoanaerobacter ethanolicus X514 | 3 | 2 |
| Thermoanaerobacter italicus Ab9 | 3 | 2 |
| Thermoanaerobacter tengcongensis MB4 | 3 | 2 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| nrdD |
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Anaerocellum thermophilum DSM 6725 Site: position = -127 score = 4.72755 sequence = ATATAATATATTGTGC Site: position = -95 score = 5.60692 sequence = ACACAATATATAGTGG Gene: Athe_0548: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -83 score = 5.60692 sequence = ACACAATATATAGTGG Site: position = -115 score = 5.12077 sequence = ATATAATATATTGTGT Gene: Csac_0774: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Gene: Moth_1449: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Thermoanaerobacter ethanolicus X514 Site: position = -378 score = 4.91307 sequence = ATACTAAATATTGGGT Site: position = -347 score = 5.27176 sequence = ACACTATATTTTGTAG Gene: Teth514_1144: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Thermoanaerobacter italicus Ab9 Site: position = -378 score = 4.91307 sequence = ATACTAAATATTGGGT Site: position = -347 score = 5.27176 sequence = ACACTATATTTTGTAG Gene: Thit_1661: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Thermoanaerobacter tengcongensis MB4 Site: position = -88 score = 4.76849 sequence = ATACTAAATATTGAGG Site: position = -57 score = 5.27176 sequence = CTACTATATTTTGTGT Gene: TTE1850: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG2 |
Gene: Athe_0341: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Csac_1169: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: Moth_1448: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Teth514_1145: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Thit_1660: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: TTE1849: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 2. | ||||||||
| nrdR |
Gene: Athe_1510: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: Csac_2057: Ribonucleotide reductase transcriptional regulator NrdR |
*
Carboxydothermus hydrogenoformans Z-2901 Site: position = -28 score = 4.88002 sequence = ACACAAAATATAGGGT Site: position = -60 score = 5.17575 sequence = ACACAAGATATAGTAG Gene: CHY_2052: Ribonucleotide reductase transcriptional regulator NrdR |
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Gene: Teth514_1998: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: Thit_1471: Ribonucleotide reductase transcriptional regulator NrdR |
Gene: TTE1634: Ribonucleotide reductase transcriptional regulator NrdR |
Ribonucleotide reductase transcriptional regulator NrdR |
| nrdD |
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Gene: CHY_2051: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
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Gene: CHY_2050: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 3. | ||||||||
| nrdJ |
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*
Thermoanaerobacter tengcongensis MB4 Site: position = -139 score = 5.48436 sequence = ATACAAAATATTGTGT Site: position = -171 score = 4.39551 sequence = ACACAACAAAATGTAT Gene: TTE2336: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| CRON 4. | ||||||||
| nrdJ |
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Gene: CHY_0676: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: Moth_1137: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
*
Thermoanaerobacter ethanolicus X514 Site: position = -41 score = 5.23097 sequence = ACACAAAATATTGTGG Site: position = -72 score = 4.43243 sequence = CCACAATAAAATGTAT Gene: Teth514_0821: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
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Thermoanaerobacter italicus Ab9 Site: position = -72 score = 4.65277 sequence = ACACAATAAAATGTAT Site: position = -41 score = 5.23097 sequence = CCACAAAATATTGTGT Gene: Thit_2029: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
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Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |