Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795 6 3
Clostridium difficile 630 4 2
Clostridium hiranonis DSM 13275 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdD
*
Clostridium bartlettii DSM 16795

Site:
position = -65
score = 5.64384
sequence = ATACTATATGTAGTAT

Site:
position = -34
score = 5.38658
sequence = CCACTATATATTGTGG

Gene: CLOBAR_00514: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium difficile 630

Site:
position = -32
score = 5.57652
sequence = ATACAATATATAGTAA

Site:
position = -64
score = 5.39045
sequence = ATACTACATATAGTGG

Gene: CD0108: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Clostridium hiranonis DSM 13275

Site:
position = -64
score = 5.61466
sequence = ACACTATATATAGTGG

Site:
position = -33
score = 5.33435
sequence = ATACTATATATAGTTG

Gene: CLOHIR_00659: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 2
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00513: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Gene: CLOBAR_00582: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Clostridium difficile 630

Gene: CD0109: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00660: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Gene: CLOHIR_00534: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD2
*
Clostridium bartlettii DSM 16795

Site:
position = -185
score = 5.04857
sequence = GCACTATATATAGTGC

Site:
position = -216
score = 5.00274
sequence = CCACAATATATGGTGT

Gene: CLOBAR_00583: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Clostridium difficile 630
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00535: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
CRON 2.
nrdE
*
Clostridium bartlettii DSM 16795

Site:
position = -218
score = 4.51886
sequence = GCACAGTATATAGTAG

Site:
position = -186
score = 5.29692
sequence = ATACTATATATGGTAT

Gene: CLOBAR_02374: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
*
Clostridium difficile 630

Site:
position = -186
score = 5.64384
sequence = ATACTATATGTAGTAT

Site:
position = -154
score = 4.42455
sequence = TGACTATATGTAGTGC

Gene: CD2995: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
 
Clostridium hiranonis DSM 13275
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdF
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02375: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium difficile 630

Gene: CD2994: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
 
Clostridium hiranonis DSM 13275
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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