Regulog NrdR - Clostridia-2
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium bartlettii DSM 16795 | 6 | 3 |
| Clostridium difficile 630 | 4 | 2 |
| Clostridium hiranonis DSM 13275 | 2 | 1 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| nrdD |
*
Clostridium bartlettii DSM 16795 Site: position = -65 score = 5.64384 sequence = ATACTATATGTAGTAT Site: position = -34 score = 5.38658 sequence = CCACTATATATTGTGG Gene: CLOBAR_00514: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Clostridium difficile 630 Site: position = -32 score = 5.57652 sequence = ATACAATATATAGTAA Site: position = -64 score = 5.39045 sequence = ATACTACATATAGTGG Gene: CD0108: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Clostridium hiranonis DSM 13275 Site: position = -64 score = 5.61466 sequence = ACACTATATATAGTGG Site: position = -33 score = 5.33435 sequence = ATACTATATATAGTTG Gene: CLOHIR_00659: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00513: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Gene: CLOBAR_00582: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CD0109: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
2
Clostridium hiranonis DSM 13275 Gene: CLOHIR_00660: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Gene: CLOHIR_00534: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| nrdD2 |
*
Clostridium bartlettii DSM 16795 Site: position = -185 score = 5.04857 sequence = GCACTATATATAGTGC Site: position = -216 score = 5.00274 sequence = CCACAATATATGGTGT Gene: CLOBAR_00583: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
|
Gene: CLOHIR_00535: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| CRON 2. | ||||
| nrdE |
*
Clostridium bartlettii DSM 16795 Site: position = -218 score = 4.51886 sequence = GCACAGTATATAGTAG Site: position = -186 score = 5.29692 sequence = ATACTATATATGGTAT Gene: CLOBAR_02374: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
*
Clostridium difficile 630 Site: position = -186 score = 5.64384 sequence = ATACTATATGTAGTAT Site: position = -154 score = 4.42455 sequence = TGACTATATGTAGTGC Gene: CD2995: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
|
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
Gene: CLOBAR_02375: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CD2994: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
|
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |