Regulog PdxR3 - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 1 | 1 |
| Arthrobacter chlorophenolicus A6 | 1 | 1 |
| Arthrobacter sp. FB24 | 1 | 1 |
| Beutenbergia cavernae DSM 12333 | 1 | 1 |
| Brachybacterium faecium DSM 4810 | ||
| Brevibacterium linens BL2 | 1 | 1 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | 1 | 1 |
| Janibacter sp. HTCC2649 | 1 | 1 |
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | ||
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | ||
| Renibacterium salmoninarum ATCC 33209 | ||
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| COG2364 |
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Arthrobacter aurescens TC1 Site: position = -60 score = 13.0892 sequence = AAGACCAGTAT-(3)-AAACTGGCTAT-(7)-AAGGCCAGTTT Gene: AAur_0775: predicted membrane protein |
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Arthrobacter chlorophenolicus A6 Site: position = -60 score = 12.5112 sequence = AGGGCCAGTAT-(3)-AAACTGGCTAT-(7)-AATGCCAGTTG Gene: Achl_0749: predicted membrane protein |
*
Arthrobacter sp. FB24 Site: position = -61 score = 12.1468 sequence = GTAGCCAGTAT-(3)-AAACTGGATAT-(7)-AAGGCCAGTTT Gene: Arth_0621: predicted membrane protein |
*2
Beutenbergia cavernae DSM 12333 Gene: Bcav_3825: predicted membrane protein Site: position = 17 score = 11.2712 sequence = CGGTCCAGTGT-(4)-GAAGTGGCTAT-(7)-CAGGCCAATCG Gene: Bcav_3925: predicted membrane protein |
Gene: Bfae_12710: predicted membrane protein |
*
Brevibacterium linens BL2 Site: position = -89 score = 11.7694 sequence = ACGACCACTTT-(4)-CAATTGGACCT-(7)-AAGACCAGTTC Gene: BlinB01002591: predicted membrane protein |
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -62 score = 10.1389 sequence = GAGGCCACAGC-(4)-CGATTGGCATC-(7)-GCAACCCCCGG Gene: CMM_0762: predicted membrane protein |
*
Janibacter sp. HTCC2649 Site: position = -43 score = 12.7696 sequence = GAGGCCACTGT-(4)-CAAGTGGCCAT-(7)-AGGGCCACTTG Gene: JNB_06009: predicted membrane protein |
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Gene: Ksed_21650: predicted membrane protein |
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predicted membrane protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |