Regulog YrdX - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
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| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - GntR/MocR
| Genome | Genes | Operons |
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| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Azorhizobium caulinodans ORS 571 | 8 | 1 |
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | ||
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | 1 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 8 | 2 |
| Rhizobium sp. NGR234 | ||
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| COG5349 |
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Rhizobium etli CFN 42 Site: position = -55 score = 7.32156 sequence = ATTGCATG-(14)-ATTGACTG Site: position = -66 score = 6.51165 sequence = ATTGTATC-(3)-ATTGCATG Gene: RHE_CH01276: conserved hypothetical protein in cyt c oxidase gene clusters |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -65 score = 7.34714 sequence = ATTGAATG-(14)-ATTGATTG Gene: RL1423: conserved hypothetical protein in cyt c oxidase gene clusters |
Gene: NGR_c19900: conserved hypothetical protein in cyt c oxidase gene clusters |
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Gene: SMc01488: conserved hypothetical protein in cyt c oxidase gene clusters |
Gene: Xaut_0415: conserved hypothetical protein in cyt c oxidase gene clusters |
conserved hypothetical protein in cyt c oxidase gene clusters |
| CRON 2. | ||||||||||||||||
| PF02635 |
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Azorhizobium caulinodans ORS 571 Site: position = -66 score = 5.72867 sequence = CTGGCACA-(3)-ATTGCAAA Site: position = -127 score = 7.20089 sequence = TTTGAATG-(4)-TTTGAATG Gene: AZC_0073: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -129 score = 7.10105 sequence = TTTGATTG-(4)-ATTGAATG Site: position = -117 score = 7.10105 sequence = ATTGAATG-(13)-TTTGACTG Site: position = -69 score = 6.22079 sequence = CTGGCATG-(9)-ATTGGATG Site: position = -227 score = 6.27561 sequence = ATTGACGA-(3)-ATTGAATG Gene: RL0661: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
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probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein |
| COG388 |
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Gene: AZC_0072: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
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Gene: RL0660: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
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Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) |
| COG2516 |
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Gene: AZC_0071: Biotin synthase-related radical SAM domain protein |
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Gene: RL0659: Biotin synthase-related radical SAM domain protein |
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Gene: RPA2614: Biotin synthase-related radical SAM domain protein |
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Biotin synthase-related radical SAM domain protein |
| COG3153 |
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Gene: AZC_0070: GCN5-related N-acetyltransferase |
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Gene: RL0658: GCN5-related N-acetyltransferase |
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GCN5-related N-acetyltransferase |
| COG2144 |
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Gene: AZC_0069: AIR synthase related protein/Selenophosphate synthetase-related |
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Gene: RL0657: AIR synthase related protein/Selenophosphate synthetase-related |
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AIR synthase related protein/Selenophosphate synthetase-related |
| COG438 (RfaG) |
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Gene: AZC_0068: Glycosyltransferase |
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Gene: RL0656: Glycosyltransferase |
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Glycosyltransferase |
| AZC_0067 |
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Gene: AZC_0067: NAD/NADP transhydrogenase alpha subunit |
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Gene: RL0655: NAD/NADP transhydrogenase alpha subunit |
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NAD/NADP transhydrogenase alpha subunit |
| COG2072 (TrkA) |
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Gene: AZC_0066: FAD dependent oxidoreductase |
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Gene: RL0654: FAD dependent oxidoreductase |
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FAD dependent oxidoreductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |