Regulog YrdX - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571	8	1
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	1	1
Rhizobium leguminosarum bv. viciae 3841	8	2
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
COG5349	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -55 score = 7.32156 sequence = ATTGCATG-(14)-ATTGACTG Site: position = -66 score = 6.51165 sequence = ATTGTATC-(3)-ATTGCATG Gene: RHE_CH01276: conserved hypothetical protein in cyt c oxidase gene clusters	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -65 score = 7.34714 sequence = ATTGAATG-(14)-ATTGATTG Gene: RL1423: conserved hypothetical protein in cyt c oxidase gene clusters	Rhizobium sp. NGR234 Gene: NGR_c19900: conserved hypothetical protein in cyt c oxidase gene clusters	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc01488: conserved hypothetical protein in cyt c oxidase gene clusters	Xanthobacter autotrophicus Py2 Gene: Xaut_0415: conserved hypothetical protein in cyt c oxidase gene clusters	conserved hypothetical protein in cyt c oxidase gene clusters

CRON 2.
PF02635	Agrobacterium tumefaciens str. C58 (Cereon)	* Azorhizobium caulinodans ORS 571 Site: position = -66 score = 5.72867 sequence = CTGGCACA-(3)-ATTGCAAA Site: position = -127 score = 7.20089 sequence = TTTGAATG-(4)-TTTGAATG Gene: AZC_0073: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -129 score = 7.10105 sequence = TTTGATTG-(4)-ATTGAATG Site: position = -117 score = 7.10105 sequence = ATTGAATG-(13)-TTTGACTG Site: position = -69 score = 6.22079 sequence = CTGGCATG-(9)-ATTGGATG Site: position = -227 score = 6.27561 sequence = ATTGACGA-(3)-ATTGAATG Gene: RL0661: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
COG388	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0072: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0660: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0071: Biotin synthase-related radical SAM domain protein	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0659: Biotin synthase-related radical SAM domain protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009 Gene: RPA2614: Biotin synthase-related radical SAM domain protein	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Biotin synthase-related radical SAM domain protein
COG3153	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0070: GCN5-related N-acetyltransferase	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0658: GCN5-related N-acetyltransferase	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	GCN5-related N-acetyltransferase
COG2144	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0069: AIR synthase related protein/Selenophosphate synthetase-related	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0657: AIR synthase related protein/Selenophosphate synthetase-related	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	AIR synthase related protein/Selenophosphate synthetase-related
COG438 (RfaG)	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0068: Glycosyltransferase	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0656: Glycosyltransferase	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Glycosyltransferase
AZC_0067	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0067: NAD/NADP transhydrogenase alpha subunit	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0655: NAD/NADP transhydrogenase alpha subunit	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	NAD/NADP transhydrogenase alpha subunit
COG2072 (TrkA)	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_0066: FAD dependent oxidoreductase	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0654: FAD dependent oxidoreductase	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	FAD dependent oxidoreductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --