Regulog ArgR - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ArgR
Regulation mode:	repressor
Biological process:	Arginine biosynthesis; Arginine degradation
Effector:	Arginine
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine biosynthesis
By pathway - Arginine degradation

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	16	6
Staphylococcus capitis SK14	11	4
Staphylococcus epidermidis ATCC 12228	15	7
Staphylococcus carnosus subsp. carnosus TM300	10	5
Staphylococcus haemolyticus JCSC1435	10	5
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	12	5
Macrococcus caseolyticus JCSC5402	6	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
rocD	* Staphylococcus aureus subsp. aureus N315 Site: position = -51 score = 4.60912 sequence = ATATATTAATATTAAT Site: position = -47 score = 4.49054 sequence = ATTAATATTAATTCTT Site: position = -27 score = 4.40534 sequence = TTGTATAAATATAAAG Gene: SA0179: ornithine aminotransferase	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228 Gene: SE1209: ornithine aminotransferase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -50 score = 5.23424 sequence = ATGAATATTAATTCAT Site: position = -54 score = 4.53086 sequence = ATTTATGAATATTAAT Site: position = -105 score = 3.84714 sequence = AAGTGTAAAAATTCAA Gene: SSP0220: ornithine aminotransferase	Macrococcus caseolyticus JCSC5402	ornithine aminotransferase
argC	Staphylococcus aureus subsp. aureus N315 Gene: SA0178: N-acetylglutamate gamma-semialdehyde dehydrogenase	Staphylococcus capitis SK14	* Staphylococcus epidermidis ATCC 12228 Site: position = -40 score = 4.68834 sequence = ATGTATATAATTACAT Site: position = -50 score = 4.53084 sequence = ATTAATAAATATGTAT Gene: SE1212: N-acetylglutamate gamma-semialdehyde dehydrogenase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0221: N-acetylglutamate gamma-semialdehyde dehydrogenase	Macrococcus caseolyticus JCSC5402	N-acetylglutamate gamma-semialdehyde dehydrogenase
argJ	Staphylococcus aureus subsp. aureus N315 Gene: SA0177: glutamate N-acetyltransferase	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228 Gene: SE1211: glutamate N-acetyltransferase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0222: glutamate N-acetyltransferase	Macrococcus caseolyticus JCSC5402	glutamate N-acetyltransferase
argB	Staphylococcus aureus subsp. aureus N315 Gene: SA0176: N-acetylglutamate 5-phosphotransferase	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228 Gene: SE1210: N-acetylglutamate 5-phosphotransferase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0223: N-acetylglutamate 5-phosphotransferase	Macrococcus caseolyticus JCSC5402	N-acetylglutamate 5-phosphotransferase

CRON 2.
cudT	* Staphylococcus aureus subsp. aureus N315 Site: position = -112 score = 4.24168 sequence = TTGCATTATTATTAAA Site: position = -157 score = 4.58952 sequence = TTATATAAATATTCAA Site: position = -267 score = 4.77374 sequence = ACGTATAAATATTCTT Site: position = -288 score = 4.82505 sequence = ATAAATAAATATTCGT Gene: SA2408: choline transporter	Staphylococcus capitis SK14	* Staphylococcus epidermidis ATCC 12228 Site: position = -26 score = 3.67909 sequence = ATAAATTAATATTAGG Site: position = -103 score = 4.24168 sequence = TTGCATTATTATTAAA Site: position = -148 score = 4.67286 sequence = TTATATAATTATTCAA Gene: SE2168: choline transporter	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -132 score = 4.53803 sequence = TTGCATTATTATAAAT Site: position = -282 score = 4.85063 sequence = AAGAATAATTATACAA Site: position = -176 score = 5.11495 sequence = ATATATATTTATTCAT Gene: Sca_2165: choline transporter	* Staphylococcus haemolyticus JCSC1435 Site: position = -261 score = 4.74171 sequence = ATAAATATAAATTCAT Site: position = -133 score = 4.85223 sequence = ATATATATTTATTCAA Gene: SH0426: choline transporter	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -32 score = 4.16867 sequence = AGTTATAAAAATAAAT Site: position = -167 score = 4.85223 sequence = TTATATAAATATTCAT Site: position = -274 score = 4.89044 sequence = ATGAATAAAGATACAT Gene: SSP0193: choline transporter	Macrococcus caseolyticus JCSC5402	choline transporter

CRON 3.
artPQ	* Staphylococcus aureus subsp. aureus N315 Site: position = -161 score = 4.08827 sequence = ATGAATATTAATTAGG Site: position = -165 score = 4.03673 sequence = AATTATGAATATTAAT Site: position = -171 score = 5.057 sequence = ATGTATAATTATGAAT Site: position = -181 score = 4.55779 sequence = ATGTATTAATATGTAT Site: position = -220 score = 4.63914 sequence = ATTGATAAAAATACAT Gene: SA1675: Arginine ABC transporter, substrate-binding and permease protein	* Staphylococcus capitis SK14 Site: position = -31 score = 4.47481 sequence = ATGTATATTTATTTAG Site: position = -41 score = 4.64113 sequence = ATGTATAATAATGTAT Site: position = -61 score = 4.28177 sequence = TTGCATTATTATAAGT Gene: STACA0001_0720: Arginine ABC transporter, substrate-binding and permease protein	* Staphylococcus epidermidis ATCC 12228 Site: position = -31 score = 5.09518 sequence = ATGTATAATTATTAAA Site: position = -41 score = 4.64113 sequence = ATGTATAATAATGTAT Site: position = -45 score = 4.00144 sequence = ATTTATGTATAATAAT Gene: SE1541: Arginine ABC transporter, substrate-binding and permease protein	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -36 score = 4.21694 sequence = ATGTATAATAATTCTG Site: position = -56 score = 4.448 sequence = TTGCATATTAATACGT Gene: Sca_1432: Arginine ABC transporter, substrate-binding and permease protein	* Staphylococcus haemolyticus JCSC1435 Site: position = -35 score = 4.1606 sequence = GTGTATAATAATGAAT Site: position = -55 score = 4.18529 sequence = TTGTATATTAATGCGA Gene: SH1104: Arginine ABC transporter, substrate-binding and permease protein	2 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305* Site: position = -37 score = 4.80074 sequence = ATGTATAATAATGAAT Site: position = -57 score = 4.18545 sequence = TTGAATATTATTTCGT Gene: SSP0936: Arginine ABC transporter, substrate-binding and permease protein Gene: SSP0937: Arginine ABC transporter, substrate-binding and permease protein	* Macrococcus caseolyticus JCSC5402 Site: position = -56 score = 4.58792 sequence = TTGTATAATTATTCTA Gene: MCCL_1584: Arginine ABC transporter, substrate-binding and permease protein	Arginine ABC transporter, substrate-binding and permease protein
artM	Staphylococcus aureus subsp. aureus N315 Gene: SA1674: Arginine ABC transporter, ATP-binding protein	Staphylococcus capitis SK14 Gene: STACA0001_0719: Arginine ABC transporter, ATP-binding protein	Staphylococcus epidermidis ATCC 12228 Gene: SE1540: Arginine ABC transporter, ATP-binding protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1431: Arginine ABC transporter, ATP-binding protein	Staphylococcus haemolyticus JCSC1435 Gene: SH1105: Arginine ABC transporter, ATP-binding protein	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0938: Arginine ABC transporter, ATP-binding protein	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1583: Arginine ABC transporter, ATP-binding protein	Arginine ABC transporter, ATP-binding protein

CRON 4.
ahrC	* Staphylococcus aureus subsp. aureus N315 Site: position = -33 score = 5.26787 sequence = ATGTATAAATATTCGT Site: position = -47 score = 4.13178 sequence = ATGTGTTAAAATAAAT Gene: SA1351: arginine repressor	* Staphylococcus capitis SK14 Site: position = -33 score = 5.00516 sequence = TTGTATAAATATTCGT Gene: STACA0001_1758: arginine repressor	* Staphylococcus epidermidis ATCC 12228 Site: position = -24 score = 5.26787 sequence = ATGTATAAATATTCGT Site: position = -38 score = 3.71899 sequence = ATGTGTTAAAATCAAT Gene: SE1201: arginine repressor	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -34 score = 5.26787 sequence = ATGTATAAATATTCGT Gene: Sca_1144: arginine repressor	* Staphylococcus haemolyticus JCSC1435 Site: position = -33 score = 4.82579 sequence = TTGTATAATTATTCGA Gene: SH1395: arginine repressor	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -33 score = 5.26787 sequence = ATGTATAAATATTCGT Gene: SSP1234: arginine repressor	* Macrococcus caseolyticus JCSC5402 Site: position = -29 score = 4.58309 sequence = ATGTATAAATATGCAC Gene: MCCL_1165: arginine repressor	arginine repressor
recN	Staphylococcus aureus subsp. aureus N315 Gene: SA1350: DNA repair protein	Staphylococcus capitis SK14 Gene: STACA0001_1757: DNA repair protein	Staphylococcus epidermidis ATCC 12228 Gene: SE1200: DNA repair protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1143: DNA repair protein	Staphylococcus haemolyticus JCSC1435 Gene: SH1396: DNA repair protein	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1235: DNA repair protein	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1164: DNA repair protein	DNA repair protein

CRON 5.
argG	* Staphylococcus aureus subsp. aureus N315 Site: position = -97 score = 4.5177 sequence = ATGAATAAATATGTAA Gene: SA0822: argininosuccinate synthase	* Staphylococcus capitis SK14 Site: position = -98 score = 4.25499 sequence = tTGaATAtTTATgtAa Gene: STACA0001_0165: argininosuccinate synthase	* Staphylococcus epidermidis ATCC 12228 Site: position = -96 score = 4.5177 sequence = ATGAATATTTATGTAA Gene: SE0657: argininosuccinate synthase	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -99 score = 4.28863 sequence = TTGTATATTTATGTAA Gene: Sca_0569: argininosuccinate synthase	* Staphylococcus haemolyticus JCSC1435 Site: position = -95 score = 4.28863 sequence = TTGTATATTTATGTAA Gene: SH1989: argininosuccinate synthase	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -110 score = 4.47952 sequence = ATGcATAtTTATgtAT Gene: SSP1814: argininosuccinate synthase	* Macrococcus caseolyticus JCSC5402 Site: position = -50 score = 5.0183 sequence = ATGTATATTAATTAAT Site: position = -96 score = 5.11334 sequence = ATGAATAATTATACTT Gene: MCCL_0587: argininosuccinate synthase	argininosuccinate synthase
argH	Staphylococcus aureus subsp. aureus N315 Gene: SA0821: argininosuccinate lyase	Staphylococcus capitis SK14 Gene: STACA0001_0166: argininosuccinate lyase	Staphylococcus epidermidis ATCC 12228 Gene: SE0656: argininosuccinate lyase	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0568: argininosuccinate lyase	Staphylococcus haemolyticus JCSC1435 Gene: SH1990: argininosuccinate lyase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1815: argininosuccinate lyase	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0586: argininosuccinate lyase	argininosuccinate lyase

CRON 6.
arcA	* Staphylococcus aureus subsp. aureus N315 Site: position = -142 score = 4.88871 sequence = ATGTATAAAAATCCAT Gene: SA2428: arginine deiminase	* Staphylococcus capitis SK14 Site: position = -140 score = 4.58393 sequence = ATGTATAAACAATCAT Site: position = -243 score = 4.05792 sequence = TTGACTAACTATTCAT Gene: STACA0001_1845: arginine deiminase	* Staphylococcus epidermidis ATCC 12228 Site: position = -267 score = 3.79406 sequence = TTCAATAAATATGAGT Gene: SE2217: arginine deiminase	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -314 score = 4.82505 sequence = ATAAATTAATATTCAT Gene: Sca_2085: arginine deiminase	* Staphylococcus haemolyticus JCSC1435 Site: position = -139 score = 4.05851 sequence = TTGTATATTCAATCAA Gene: SH0367: arginine deiminase	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	arginine deiminase
arcB	Staphylococcus aureus subsp. aureus N315 Gene: SA2427: ornithine carbamoyltransferase	Staphylococcus capitis SK14 Gene: STACA0001_1844: ornithine carbamoyltransferase	Staphylococcus epidermidis ATCC 12228 Gene: SE2216: ornithine carbamoyltransferase	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	ornithine carbamoyltransferase
arcD	Staphylococcus aureus subsp. aureus N315 Gene: SA2426: arginine/ornithine antiporter	Staphylococcus capitis SK14 Gene: STACA0001_1843: arginine/ornithine antiporter	* Staphylococcus epidermidis ATCC 12228 Site: position = -72 score = 4.51289 sequence = ATCTATATATATGCAT Gene: SE2215: arginine/ornithine antiporter	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_2084: arginine/ornithine antiporter	Staphylococcus haemolyticus JCSC1435 Gene: SH0368: arginine/ornithine antiporter	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	arginine/ornithine antiporter
arcC	Staphylococcus aureus subsp. aureus N315 Gene: SA2425: carbamate kinase	Staphylococcus capitis SK14 Gene: STACA0001_1842: carbamate kinase	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	carbamate kinase
arcR	Staphylococcus aureus subsp. aureus N315 Gene: SA2424: transcription regulator of arginine catabolism, Crp/Fnr family	Staphylococcus capitis SK14 Gene: STACA0001_1841: transcription regulator of arginine catabolism, Crp/Fnr family	Staphylococcus epidermidis ATCC 12228 Gene: SE2214: transcription regulator of arginine catabolism, Crp/Fnr family	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_2083: transcription regulator of arginine catabolism, Crp/Fnr family	Staphylococcus haemolyticus JCSC1435 Gene: SH0369: transcription regulator of arginine catabolism, Crp/Fnr family	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	transcription regulator of arginine catabolism, Crp/Fnr family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ArgR - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --