Regulog ArgR - Staphylococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor |
| Biological process: | Arginine biosynthesis; Arginine degradation |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
- By pathway - Arginine degradation
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 16 | 6 |
| Staphylococcus capitis SK14 | 11 | 4 |
| Staphylococcus epidermidis ATCC 12228 | 15 | 7 |
| Staphylococcus carnosus subsp. carnosus TM300 | 10 | 5 |
| Staphylococcus haemolyticus JCSC1435 | 10 | 5 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 12 | 5 |
| Macrococcus caseolyticus JCSC5402 | 6 | 3 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| rocD |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -51 score = 4.60912 sequence = ATATATTAATATTAAT Site: position = -47 score = 4.49054 sequence = ATTAATATTAATTCTT Site: position = -27 score = 4.40534 sequence = TTGTATAAATATAAAG Gene: SA0179: ornithine aminotransferase |
|
Gene: SE1209: ornithine aminotransferase |
|
|
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -50 score = 5.23424 sequence = ATGAATATTAATTCAT Site: position = -54 score = 4.53086 sequence = ATTTATGAATATTAAT Site: position = -105 score = 3.84714 sequence = AAGTGTAAAAATTCAA Gene: SSP0220: ornithine aminotransferase |
|
ornithine aminotransferase |
| argC |
Gene: SA0178: N-acetylglutamate gamma-semialdehyde dehydrogenase |
|
*
Staphylococcus epidermidis ATCC 12228 Site: position = -40 score = 4.68834 sequence = ATGTATATAATTACAT Site: position = -50 score = 4.53084 sequence = ATTAATAAATATGTAT Gene: SE1212: N-acetylglutamate gamma-semialdehyde dehydrogenase |
|
|
Gene: SSP0221: N-acetylglutamate gamma-semialdehyde dehydrogenase |
|
N-acetylglutamate gamma-semialdehyde dehydrogenase |
| argJ |
Gene: SA0177: glutamate N-acetyltransferase |
|
Gene: SE1211: glutamate N-acetyltransferase |
|
|
Gene: SSP0222: glutamate N-acetyltransferase |
|
glutamate N-acetyltransferase |
| argB |
Gene: SA0176: N-acetylglutamate 5-phosphotransferase |
|
Gene: SE1210: N-acetylglutamate 5-phosphotransferase |
|
|
Gene: SSP0223: N-acetylglutamate 5-phosphotransferase |
|
N-acetylglutamate 5-phosphotransferase |
| CRON 2. | ||||||||
| cudT |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -112 score = 4.24168 sequence = TTGCATTATTATTAAA Site: position = -157 score = 4.58952 sequence = TTATATAAATATTCAA Site: position = -267 score = 4.77374 sequence = ACGTATAAATATTCTT Site: position = -288 score = 4.82505 sequence = ATAAATAAATATTCGT Gene: SA2408: choline transporter |
|
*
Staphylococcus epidermidis ATCC 12228 Site: position = -26 score = 3.67909 sequence = ATAAATTAATATTAGG Site: position = -103 score = 4.24168 sequence = TTGCATTATTATTAAA Site: position = -148 score = 4.67286 sequence = TTATATAATTATTCAA Gene: SE2168: choline transporter |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -132 score = 4.53803 sequence = TTGCATTATTATAAAT Site: position = -282 score = 4.85063 sequence = AAGAATAATTATACAA Site: position = -176 score = 5.11495 sequence = ATATATATTTATTCAT Gene: Sca_2165: choline transporter |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -261 score = 4.74171 sequence = ATAAATATAAATTCAT Site: position = -133 score = 4.85223 sequence = ATATATATTTATTCAA Gene: SH0426: choline transporter |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -32 score = 4.16867 sequence = AGTTATAAAAATAAAT Site: position = -167 score = 4.85223 sequence = TTATATAAATATTCAT Site: position = -274 score = 4.89044 sequence = ATGAATAAAGATACAT Gene: SSP0193: choline transporter |
|
choline transporter |
| CRON 3. | ||||||||
| artPQ |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -161 score = 4.08827 sequence = ATGAATATTAATTAGG Site: position = -165 score = 4.03673 sequence = AATTATGAATATTAAT Site: position = -171 score = 5.057 sequence = ATGTATAATTATGAAT Site: position = -181 score = 4.55779 sequence = ATGTATTAATATGTAT Site: position = -220 score = 4.63914 sequence = ATTGATAAAAATACAT Gene: SA1675: Arginine ABC transporter, substrate-binding and permease protein |
*
Staphylococcus capitis SK14 Site: position = -31 score = 4.47481 sequence = ATGTATATTTATTTAG Site: position = -41 score = 4.64113 sequence = ATGTATAATAATGTAT Site: position = -61 score = 4.28177 sequence = TTGCATTATTATAAGT Gene: STACA0001_0720: Arginine ABC transporter, substrate-binding and permease protein |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -31 score = 5.09518 sequence = ATGTATAATTATTAAA Site: position = -41 score = 4.64113 sequence = ATGTATAATAATGTAT Site: position = -45 score = 4.00144 sequence = ATTTATGTATAATAAT Gene: SE1541: Arginine ABC transporter, substrate-binding and permease protein |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -36 score = 4.21694 sequence = ATGTATAATAATTCTG Site: position = -56 score = 4.448 sequence = TTGCATATTAATACGT Gene: Sca_1432: Arginine ABC transporter, substrate-binding and permease protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -35 score = 4.1606 sequence = GTGTATAATAATGAAT Site: position = -55 score = 4.18529 sequence = TTGTATATTAATGCGA Gene: SH1104: Arginine ABC transporter, substrate-binding and permease protein |
*2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -37 score = 4.80074 sequence = ATGTATAATAATGAAT Site: position = -57 score = 4.18545 sequence = TTGAATATTATTTCGT Gene: SSP0936: Arginine ABC transporter, substrate-binding and permease protein Gene: SSP0937: Arginine ABC transporter, substrate-binding and permease protein |
*
Macrococcus caseolyticus JCSC5402 Site: position = -56 score = 4.58792 sequence = TTGTATAATTATTCTA Gene: MCCL_1584: Arginine ABC transporter, substrate-binding and permease protein |
Arginine ABC transporter, substrate-binding and permease protein |
| artM |
Gene: SA1674: Arginine ABC transporter, ATP-binding protein |
Gene: STACA0001_0719: Arginine ABC transporter, ATP-binding protein |
Gene: SE1540: Arginine ABC transporter, ATP-binding protein |
Gene: Sca_1431: Arginine ABC transporter, ATP-binding protein |
Gene: SH1105: Arginine ABC transporter, ATP-binding protein |
Gene: SSP0938: Arginine ABC transporter, ATP-binding protein |
Gene: MCCL_1583: Arginine ABC transporter, ATP-binding protein |
Arginine ABC transporter, ATP-binding protein |
| CRON 4. | ||||||||
| ahrC |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -33 score = 5.26787 sequence = ATGTATAAATATTCGT Site: position = -47 score = 4.13178 sequence = ATGTGTTAAAATAAAT Gene: SA1351: arginine repressor |
*
Staphylococcus capitis SK14 Site: position = -33 score = 5.00516 sequence = TTGTATAAATATTCGT Gene: STACA0001_1758: arginine repressor |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -24 score = 5.26787 sequence = ATGTATAAATATTCGT Site: position = -38 score = 3.71899 sequence = ATGTGTTAAAATCAAT Gene: SE1201: arginine repressor |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -34 score = 5.26787 sequence = ATGTATAAATATTCGT Gene: Sca_1144: arginine repressor |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -33 score = 4.82579 sequence = TTGTATAATTATTCGA Gene: SH1395: arginine repressor |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -33 score = 5.26787 sequence = ATGTATAAATATTCGT Gene: SSP1234: arginine repressor |
*
Macrococcus caseolyticus JCSC5402 Site: position = -29 score = 4.58309 sequence = ATGTATAAATATGCAC Gene: MCCL_1165: arginine repressor |
arginine repressor |
| recN |
Gene: SA1350: DNA repair protein |
Gene: STACA0001_1757: DNA repair protein |
Gene: SE1200: DNA repair protein |
Gene: Sca_1143: DNA repair protein |
Gene: SH1396: DNA repair protein |
Gene: SSP1235: DNA repair protein |
Gene: MCCL_1164: DNA repair protein |
DNA repair protein |
| CRON 5. | ||||||||
| argG |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -97 score = 4.5177 sequence = ATGAATAAATATGTAA Gene: SA0822: argininosuccinate synthase |
*
Staphylococcus capitis SK14 Site: position = -98 score = 4.25499 sequence = tTGaATAtTTATgtAa Gene: STACA0001_0165: argininosuccinate synthase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -96 score = 4.5177 sequence = ATGAATATTTATGTAA Gene: SE0657: argininosuccinate synthase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -99 score = 4.28863 sequence = TTGTATATTTATGTAA Gene: Sca_0569: argininosuccinate synthase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -95 score = 4.28863 sequence = TTGTATATTTATGTAA Gene: SH1989: argininosuccinate synthase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -110 score = 4.47952 sequence = ATGcATAtTTATgtAT Gene: SSP1814: argininosuccinate synthase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -50 score = 5.0183 sequence = ATGTATATTAATTAAT Site: position = -96 score = 5.11334 sequence = ATGAATAATTATACTT Gene: MCCL_0587: argininosuccinate synthase |
argininosuccinate synthase |
| argH |
Gene: SA0821: argininosuccinate lyase |
Gene: STACA0001_0166: argininosuccinate lyase |
Gene: SE0656: argininosuccinate lyase |
Gene: Sca_0568: argininosuccinate lyase |
Gene: SH1990: argininosuccinate lyase |
Gene: SSP1815: argininosuccinate lyase |
Gene: MCCL_0586: argininosuccinate lyase |
argininosuccinate lyase |
| CRON 6. | ||||||||
| arcA |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -142 score = 4.88871 sequence = ATGTATAAAAATCCAT Gene: SA2428: arginine deiminase |
*
Staphylococcus capitis SK14 Site: position = -140 score = 4.58393 sequence = ATGTATAAACAATCAT Site: position = -243 score = 4.05792 sequence = TTGACTAACTATTCAT Gene: STACA0001_1845: arginine deiminase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -267 score = 3.79406 sequence = TTCAATAAATATGAGT Gene: SE2217: arginine deiminase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -314 score = 4.82505 sequence = ATAAATTAATATTCAT Gene: Sca_2085: arginine deiminase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -139 score = 4.05851 sequence = TTGTATATTCAATCAA Gene: SH0367: arginine deiminase |
|
|
arginine deiminase |
| arcB |
Gene: SA2427: ornithine carbamoyltransferase |
Gene: STACA0001_1844: ornithine carbamoyltransferase |
Gene: SE2216: ornithine carbamoyltransferase |
|
|
|
|
ornithine carbamoyltransferase |
| arcD |
Gene: SA2426: arginine/ornithine antiporter |
Gene: STACA0001_1843: arginine/ornithine antiporter |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -72 score = 4.51289 sequence = ATCTATATATATGCAT Gene: SE2215: arginine/ornithine antiporter |
Gene: Sca_2084: arginine/ornithine antiporter |
Gene: SH0368: arginine/ornithine antiporter |
|
|
arginine/ornithine antiporter |
| arcC |
Gene: SA2425: carbamate kinase |
Gene: STACA0001_1842: carbamate kinase |
|
|
|
|
|
carbamate kinase |
| arcR |
Gene: SA2424: transcription regulator of arginine catabolism, Crp/Fnr family |
Gene: STACA0001_1841: transcription regulator of arginine catabolism, Crp/Fnr family |
Gene: SE2214: transcription regulator of arginine catabolism, Crp/Fnr family |
Gene: Sca_2083: transcription regulator of arginine catabolism, Crp/Fnr family |
Gene: SH0369: transcription regulator of arginine catabolism, Crp/Fnr family |
|
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transcription regulator of arginine catabolism, Crp/Fnr family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |