Regulog DasR - Nocardiaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	Glucosamine-6-phosphate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Nocardiaceae
By trascription factor - DasR
By TF family - GntR/Others
By effector - Glucosamine-6-phosphate
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Nocardia farcinica IFM 10152
Rhodococcus erythropolis PR4	8	2
Rhodococcus opacus B4	8	2
Rhodococcus sp. RHA1	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
nagE_B	Nocardia farcinica IFM 10152	* Rhodococcus erythropolis PR4 Site: position = -155 score = 5.87734 sequence = TCCGGTCATAACCAGT Gene: RER_39620: PTS system, N-acetylglucosamine-specific IIB component	* Rhodococcus opacus B4 Site: position = -123 score = 5.87734 sequence = TCCGGTCATAACCAGT Gene: ROP_12540: PTS system, N-acetylglucosamine-specific IIB component	* Rhodococcus sp. RHA1 Site: position = -31 score = 5.87734 sequence = TCCGGTCATAACCAGT Gene: RHA1_ro01551: PTS system, N-acetylglucosamine-specific IIB component	PTS system, N-acetylglucosamine-specific IIB component
nagE_A	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4 Gene: RER_39630: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69)	Rhodococcus opacus B4 Gene: ROP_12550: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69)	Rhodococcus sp. RHA1 Gene: RHA1_ro01552: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69)	PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69)

CRON 2.
nagE	Nocardia farcinica IFM 10152	* Rhodococcus erythropolis PR4 Site: position = -188 score = 5.87734 sequence = ACTGGTTATGACCGGA Gene: RER_39610: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)	* Rhodococcus opacus B4 Site: position = -140 score = 5.87734 sequence = ACTGGTTATGACCGGA Gene: ROP_12530: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)	* Rhodococcus sp. RHA1 Site: position = -176 score = 5.87734 sequence = ACTGGTTATGACCGGA Gene: RHA1_ro01550: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)	PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
ptsH	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4 Gene: RER_39600: Phosphotransferase system, phosphocarrier protein HPr	Rhodococcus opacus B4 Gene: ROP_12520: Phosphotransferase system, phosphocarrier protein HPr	Rhodococcus sp. RHA1	Phosphotransferase system, phosphocarrier protein HPr
ptsI	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4 Gene: RER_39590: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Rhodococcus opacus B4 Gene: ROP_12510: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Rhodococcus sp. RHA1 Gene: RHA1_ro01549: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
nagA	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4 Gene: RER_39580: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Rhodococcus opacus B4 Gene: ROP_12500: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Rhodococcus sp. RHA1 Gene: RHA1_ro01548: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4 Gene: RER_39570: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Rhodococcus opacus B4 Gene: ROP_12490: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Rhodococcus sp. RHA1 Gene: RHA1_ro01547: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
cutC	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4 Gene: RER_39560: Cytoplasmic copper homeostasis protein cutC	Rhodococcus opacus B4 Gene: ROP_12480: Cytoplasmic copper homeostasis protein cutC	Rhodococcus sp. RHA1 Gene: RHA1_ro01546: Cytoplasmic copper homeostasis protein cutC	Cytoplasmic copper homeostasis protein cutC

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DasR - Nocardiaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --