Regulog DasR - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | Glucosamine-6-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By trascription factor - DasR
- By TF family - GntR/Others
- By effector - Glucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | ||
| Rhodococcus erythropolis PR4 | 8 | 2 |
| Rhodococcus opacus B4 | 8 | 2 |
| Rhodococcus sp. RHA1 | 7 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| nagE_B |
|
*
Rhodococcus erythropolis PR4 Site: position = -155 score = 5.87734 sequence = TCCGGTCATAACCAGT Gene: RER_39620: PTS system, N-acetylglucosamine-specific IIB component |
*
Rhodococcus opacus B4 Site: position = -123 score = 5.87734 sequence = TCCGGTCATAACCAGT Gene: ROP_12540: PTS system, N-acetylglucosamine-specific IIB component |
*
Rhodococcus sp. RHA1 Site: position = -31 score = 5.87734 sequence = TCCGGTCATAACCAGT Gene: RHA1_ro01551: PTS system, N-acetylglucosamine-specific IIB component |
PTS system, N-acetylglucosamine-specific IIB component |
| nagE_A |
|
Gene: RER_39630: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) |
Gene: ROP_12550: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) |
Gene: RHA1_ro01552: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) |
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) |
| CRON 2. | |||||
| nagE |
|
*
Rhodococcus erythropolis PR4 Site: position = -188 score = 5.87734 sequence = ACTGGTTATGACCGGA Gene: RER_39610: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Rhodococcus opacus B4 Site: position = -140 score = 5.87734 sequence = ACTGGTTATGACCGGA Gene: ROP_12530: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Rhodococcus sp. RHA1 Site: position = -176 score = 5.87734 sequence = ACTGGTTATGACCGGA Gene: RHA1_ro01550: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
| ptsH |
|
Gene: RER_39600: Phosphotransferase system, phosphocarrier protein HPr |
Gene: ROP_12520: Phosphotransferase system, phosphocarrier protein HPr |
|
Phosphotransferase system, phosphocarrier protein HPr |
| ptsI |
|
Gene: RER_39590: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: ROP_12510: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: RHA1_ro01549: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
| nagA |
|
Gene: RER_39580: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: ROP_12500: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: RHA1_ro01548: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagB |
|
Gene: RER_39570: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: ROP_12490: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: RHA1_ro01547: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| cutC |
|
Gene: RER_39560: Cytoplasmic copper homeostasis protein cutC |
Gene: ROP_12480: Cytoplasmic copper homeostasis protein cutC |
Gene: RHA1_ro01546: Cytoplasmic copper homeostasis protein cutC |
Cytoplasmic copper homeostasis protein cutC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |