Regulog NagR - Listeriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Listeriaceae
- By TF family - GntR/Others
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Listeria innocua Clip11262 | 6 | 4 |
| Listeria monocytogenes EGD-e | 6 | 4 |
| Listeria seeligeri serovar 1/2b str. SLCC3954 | 6 | 4 |
| Listeria welshimeri serovar 6b str. SLCC5334 | 6 | 4 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| COG3469 |
*
Listeria innocua Clip11262 Site: position = -123 score = 5.37901 sequence = GAATTGGTCTATATCAATTT Gene: lin1996: Chitinase (EC 3.2.1.14) |
*
Listeria monocytogenes EGD-e Site: position = -123 score = 5.78888 sequence = AAATTGGTCTATATCAATTT Gene: lmo1883: Chitinase (EC 3.2.1.14) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -139 score = 5.78888 sequence = AAATTGGTCTATATCAATTT Gene: lse_1866: Chitinase (EC 3.2.1.14) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -123 score = 5.37901 sequence = GAATTGGTCTATATCAATTT Gene: lwe1902: Chitinase (EC 3.2.1.14) |
Chitinase (EC 3.2.1.14) |
| CRON 2. | |||||
| nagA |
*
Listeria innocua Clip11262 Site: position = -39 score = 5.98695 sequence = TAATTGGTATAGACCGATTT Gene: lin0955: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
*
Listeria monocytogenes EGD-e Site: position = -39 score = 5.98695 sequence = TAATTGGTATAGACCGATTT Gene: lmo0956: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -39 score = 5.98695 sequence = TAATTGGTATAGACCGATTT Gene: lse_0858: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -39 score = 5.98695 sequence = TAATTGGTATAGACCGATTT Gene: lwe0938: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagB |
Gene: lin0956: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: lmo0957: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: lse_0859: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: lwe0939: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| nagR |
Gene: lin0957: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: lmo0958: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: lse_0860: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: lwe0940: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
| CRON 3. | |||||
| pfk |
*
Listeria innocua Clip11262 Site: position = -203 score = 4.67041 sequence = TCACAAGTATAGACCAATTA Site: position = -149 score = 5.07196 sequence = GAAATGGAATAGACCGATAT Gene: lin1606: 6-phosphofructokinase (EC 2.7.1.11) |
*
Listeria monocytogenes EGD-e Site: position = -202 score = 4.67041 sequence = TCACAAGTATAGACCAATTA Site: position = -242 score = 3.91031 sequence = TCTTTGGTATATGCCAAACG Site: position = -149 score = 5.19824 sequence = AAATCGGAATAGACCGGTTT Gene: lmo1571: 6-phosphofructokinase (EC 2.7.1.11) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -203 score = 4.2803 sequence = TCACAAGTATAGACCAATTC Site: position = -149 score = 4.35194 sequence = CGATTGGGATAGTCCAATAT Gene: lse_1486: 6-phosphofructokinase (EC 2.7.1.11) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -244 score = 4.76891 sequence = TCATTGGTATACACCAAAGA Site: position = -203 score = 4.48907 sequence = TCACAAGTATAGACCGATTA Site: position = -149 score = 5.05328 sequence = TAATAGGAATAGACCAATAC Gene: lwe1584: 6-phosphofructokinase (EC 2.7.1.11) |
6-phosphofructokinase (EC 2.7.1.11) |
| CRON 4. | |||||
| fbp |
*
Listeria innocua Clip11262 Site: position = -95 score = 4.9626 sequence = CTTTTTGTATAGACCAATAA Gene: lin0825: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
*
Listeria monocytogenes EGD-e Site: position = -95 score = 5.03619 sequence = TTTTTTGTATAGACCAATTG Gene: lmo0830: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -95 score = 4.98236 sequence = CTTTTTGTATAGACCAATAT Gene: lse_0730: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -95 score = 5.05595 sequence = CTTTTTGTATAGACCAATTT Gene: lwe0821: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |