Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NagR - Listeriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 22 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Listeria innocua Clip11262 6 4
Listeria monocytogenes EGD-e 6 4
Listeria seeligeri serovar 1/2b str. SLCC3954 6 4
Listeria welshimeri serovar 6b str. SLCC5334 6 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG3469
*
Listeria innocua Clip11262

Site:
position = -123
score = 5.37901
sequence = GAATTGGTCTATATCAATTT

Gene: lin1996: Chitinase (EC 3.2.1.14)
*
Listeria monocytogenes EGD-e

Site:
position = -123
score = 5.78888
sequence = AAATTGGTCTATATCAATTT

Gene: lmo1883: Chitinase (EC 3.2.1.14)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -139
score = 5.78888
sequence = AAATTGGTCTATATCAATTT

Gene: lse_1866: Chitinase (EC 3.2.1.14)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -123
score = 5.37901
sequence = GAATTGGTCTATATCAATTT

Gene: lwe1902: Chitinase (EC 3.2.1.14)
Chitinase (EC 3.2.1.14)
 
CRON 2.
nagA
*
Listeria innocua Clip11262

Site:
position = -39
score = 5.98695
sequence = TAATTGGTATAGACCGATTT

Gene: lin0955: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
*
Listeria monocytogenes EGD-e

Site:
position = -39
score = 5.98695
sequence = TAATTGGTATAGACCGATTT

Gene: lmo0956: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -39
score = 5.98695
sequence = TAATTGGTATAGACCGATTT

Gene: lse_0858: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -39
score = 5.98695
sequence = TAATTGGTATAGACCGATTT

Gene: lwe0938: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB
 
Listeria innocua Clip11262

Gene: lin0956: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
Listeria monocytogenes EGD-e

Gene: lmo0957: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_0859: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe0939: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
nagR
 
Listeria innocua Clip11262

Gene: lin0957: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Listeria monocytogenes EGD-e

Gene: lmo0958: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_0860: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe0940: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
 
CRON 3.
pfk
*
Listeria innocua Clip11262

Site:
position = -203
score = 4.67041
sequence = TCACAAGTATAGACCAATTA

Site:
position = -149
score = 5.07196
sequence = GAAATGGAATAGACCGATAT

Gene: lin1606: 6-phosphofructokinase (EC 2.7.1.11)
*
Listeria monocytogenes EGD-e

Site:
position = -202
score = 4.67041
sequence = TCACAAGTATAGACCAATTA

Site:
position = -242
score = 3.91031
sequence = TCTTTGGTATATGCCAAACG

Site:
position = -149
score = 5.19824
sequence = AAATCGGAATAGACCGGTTT

Gene: lmo1571: 6-phosphofructokinase (EC 2.7.1.11)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -203
score = 4.2803
sequence = TCACAAGTATAGACCAATTC

Site:
position = -149
score = 4.35194
sequence = CGATTGGGATAGTCCAATAT

Gene: lse_1486: 6-phosphofructokinase (EC 2.7.1.11)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -244
score = 4.76891
sequence = TCATTGGTATACACCAAAGA

Site:
position = -203
score = 4.48907
sequence = TCACAAGTATAGACCGATTA

Site:
position = -149
score = 5.05328
sequence = TAATAGGAATAGACCAATAC

Gene: lwe1584: 6-phosphofructokinase (EC 2.7.1.11)
6-phosphofructokinase (EC 2.7.1.11)
 
CRON 4.
fbp
*
Listeria innocua Clip11262

Site:
position = -95
score = 4.9626
sequence = CTTTTTGTATAGACCAATAA

Gene: lin0825: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
*
Listeria monocytogenes EGD-e

Site:
position = -95
score = 5.03619
sequence = TTTTTTGTATAGACCAATTG

Gene: lmo0830: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -95
score = 4.98236
sequence = CTTTTTGTATAGACCAATAT

Gene: lse_0730: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -95
score = 5.05595
sequence = CTTTTTGTATAGACCAATTT

Gene: lwe0821: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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