Regulog AcnR - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | Citrate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - AcnR
- By TF family - TetR
- By effector - Citrate
- By pathway - Tricarboxylic acid cycle
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | 3 | 3 |
| Saccharomonospora viridis DSM 43017 | 3 | 3 |
| Saccharopolyspora erythraea NRRL 2338 | 2 | 2 |
| Nakamurella multipartita DSM 44233 | 2 | 1 |
| Frankia sp. EAN1pec | ||
| Frankia sp. CcI3 | ||
| Acidothermus cellulolyticus 11B | ||
| Propionibacterium acnes KPA171202 | ||
| Nocardioides sp. JS614 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| acnA |
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Actinosynnema mirum DSM 43827 Site: position = -103 score = 5.76025 sequence = CAGGACACGCGTACTG Gene: Amir_2132: Aconitate hydratase (EC 4.2.1.3) |
*
Saccharomonospora viridis DSM 43017 Site: position = -119 score = 4.58551 sequence = AAGGACAAGCGTACGG Gene: Svir_22420: Aconitate hydratase (EC 4.2.1.3) |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -114 score = 5.78986 sequence = CAGGACAAGCGTACTG Gene: SACE_3811: Aconitate hydratase (EC 4.2.1.3) |
*
Nakamurella multipartita DSM 44233 Site: position = -158 score = 5.78986 sequence = CAGGACAAGCGTACTG Gene: Namu_2293: Aconitate hydratase (EC 4.2.1.3) |
Gene: Franean1_2167: Aconitate hydratase (EC 4.2.1.3) |
Gene: Francci3_1312: Aconitate hydratase (EC 4.2.1.3) |
Gene: Acel_1394: Aconitate hydratase (EC 4.2.1.3) |
Gene: PPA1061: Aconitate hydratase (EC 4.2.1.3) |
Gene: Noca_2876: Aconitate hydratase (EC 4.2.1.3) |
Aconitate hydratase (EC 4.2.1.3) |
| acnR |
*
Actinosynnema mirum DSM 43827 Site: position = -53 score = 4.06725 sequence = CAATCCGTACGTACTG Gene: Amir_2120: Aconitase gene transcriptional regulator AcnR, TetR family |
*
Saccharomonospora viridis DSM 43017 Site: position = -52 score = 4.69135 sequence = CAGTACGTACGTACGG Gene: Svir_22500: Aconitase gene transcriptional regulator AcnR, TetR family |
Gene: SACE_3827: Aconitase gene transcriptional regulator AcnR, TetR family |
Gene: Namu_2292: Aconitase gene transcriptional regulator AcnR, TetR family |
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Aconitase gene transcriptional regulator AcnR, TetR family |
| CRON 2. | ||||||||||
| icd |
*
Actinosynnema mirum DSM 43827 Site: position = -48 score = 5.78986 sequence = CAGTACGCTTGTCCTG Gene: Amir_6478: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Saccharomonospora viridis DSM 43017 Site: position = -75 score = 5.42278 sequence = CAGTACGCTTGTACCG Gene: Svir_05050: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Saccharopolyspora erythraea NRRL 2338 Site: position = -48 score = 5.42278 sequence = CAGTACGCTTGTACCG Gene: SACE_6636: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: Namu_1281: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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Gene: Acel_0388: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |