Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LtbR - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Leucine biosynthesis
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152 3 2
Rhodococcus erythropolis PR4 3 2
Rhodococcus opacus B4 3 2
Rhodococcus sp. RHA1 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ltbR
*
Nocardia farcinica IFM 10152

Site:
position = -24
score = 5.42288
sequence = TATACGAGACGCTAGTATC

Gene: nfa42130: Leucine and tryptophan biosynthesis transcriptional regulator LtbR, IclR family
*
Rhodococcus erythropolis PR4

Site:
position = -24
score = 5.83545
sequence = TATGCGAGAAACTGGTATC

Gene: RER_24070: Leucine and tryptophan biosynthesis transcriptional regulator LtbR, IclR family
*
Rhodococcus opacus B4

Site:
position = -24
score = 5.65633
sequence = TATGCGAGAAAGTGGTATC

Gene: ROP_65490: Leucine and tryptophan biosynthesis transcriptional regulator LtbR, IclR family
*
Rhodococcus sp. RHA1

Site:
position = -24
score = 5.65633
sequence = TATGCGAGAAAGTGGTATC

Gene: RHA1_ro06498: Leucine and tryptophan biosynthesis transcriptional regulator LtbR, IclR family
Leucine and tryptophan biosynthesis transcriptional regulator LtbR, IclR family
 
CRON 2.
leuC
*
Nocardia farcinica IFM 10152

Site:
position = -149
score = 5.42288
sequence = GATACTAGCGTCTCGTATA

Gene: nfa42120: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Rhodococcus erythropolis PR4

Site:
position = -173
score = 5.83545
sequence = GATACCAGTTTCTCGCATA

Gene: RER_24080: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*2
Rhodococcus opacus B4

Site:
position = -133
score = 5.65633
sequence = GATACCACTTTCTCGCATA

Gene: ROP_65500: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)

Gene: ROP_53350: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*2
Rhodococcus sp. RHA1

Site:
position = -52
score = 5.65633
sequence = GATACCACTTTCTCGCATA

Gene: RHA1_ro06499: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)

Gene: RHA1_ro00727: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
leuD
 
Nocardia farcinica IFM 10152

Gene: nfa42110: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Rhodococcus erythropolis PR4

Gene: RER_24090: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 2
Rhodococcus opacus B4

Gene: ROP_65510: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)

Gene: ROP_53340: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 2
Rhodococcus sp. RHA1

Gene: RHA1_ro06500: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)

Gene: RHA1_ro00726: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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