Regulog HcpR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By trascription factor - HcpR
- By TF family - CRP
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 8 | 6 |
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 5 | 4 |
| Clostridium botulinum A str. ATCC 3502 | 6 | 5 |
| Clostridium kluyveri DSM 555 | 3 | 3 |
| Clostridium novyi NT | 3 | 3 |
| Clostridium perfringens ATCC 13124 | 3 | 2 |
| Clostridium tetani E88 | 9 | 7 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| Cbei_4355 |
*
Clostridium acetobutylicum ATCC 824 Site: position = -83 score = 5.91415 sequence = TAGTAACATAAGTTACAG Gene: CAC0362: Conserved protein |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -82 score = 5.84437 sequence = TTGTAACTTTTGTTACAT Gene: Cbei_4355: Conserved protein |
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*
Clostridium tetani E88 Site: position = -73 score = 5.37611 sequence = TCGTAACATACGTTACTT Gene: CTC02534: Conserved protein |
Conserved protein |
| CRON 2. | |||||||||
| hcpR |
*
Clostridium acetobutylicum ATCC 824 Site: position = -40 score = 5.91881 sequence = CAGTAACATATGTTACAC Gene: CAC0884: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Gene: CBY_3934: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Gene: Cbei_0780: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -45 score = 5.9164 sequence = CTGTAACTAATGTTACCA Gene: CBO2923: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
*
Clostridium kluyveri DSM 555 Site: position = -67 score = 5.48446 sequence = CTGTAACTTACGTTACAC Gene: CKL_2420: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
*
Clostridium novyi NT Site: position = -63 score = 5.51741 sequence = ATGTAACCTAAGTTACCA Gene: NT01CX_0590: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Gene: CPF_2845: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
*2
Clostridium tetani E88 Site: position = -20 score = 5.4024 sequence = CAGTAACCATAGTTACTA Gene: CTC00896: Nitric oxide-resposive transcriptional regulator HcpR, Crp family Gene: CTC01969: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
| CRON 3. | |||||||||
| CTC00897 |
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*
Clostridium tetani E88 Site: position = -98 score = 5.4024 sequence = TAGTAACTATGGTTACTG Gene: CTC00897: conserved protein, permease-related |
conserved protein, permease-related |
| CTC00898 |
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Gene: CTC00898: 4Fe-4S binding domain |
4Fe-4S binding domain |
| CRON 4. | |||||||||
| Cbei_3757 |
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Gene: Cbei_3757: hypothetical protein |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -110 score = 5.72255 sequence = TAGTAACATTAGTTACTG Gene: CBO2926: hypothetical protein |
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*
Clostridium tetani E88 Site: position = -108 score = 5.91415 sequence = TAGTAACATAAGTTACAG Gene: CTC00439: conserved protein |
hypothetical protein |
| CRON 5. | |||||||||
| hcp |
*2
Clostridium acetobutylicum ATCC 824 Site: position = -107 score = 5.80495 sequence = TAGTAACCAATGTTACAG Gene: CA_C3428: Hydroxylamine reductase (EC 1.7.-.-) Site: position = -88 score = 5.77642 sequence = AAGTAACAATTGTTACGG Gene: CA_C2750: Hydroxylamine reductase (EC 1.7.-.-) |
|
*2
Clostridium beijerincki NCIMB 8052 Site: position = -126 score = 5.21415 sequence = TAGTAACGTGTGTTACAG Gene: Cbei_2276: Hydroxylamine reductase (EC 1.7.-.-) Site: position = -223 score = 5.48946 sequence = GCGTAACCATTGTTACAG Site: position = -128 score = 5.75574 sequence = TAGTAACGTATGTTACAG Gene: Cbei_1434: Hydroxylamine reductase (EC 1.7.-.-) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -122 score = 5.99654 sequence = TTGTAACATAGGTTACAG Gene: CBO2792: Hydroxylamine reductase (EC 1.7.-.-) |
*
Clostridium kluyveri DSM 555 Site: position = -100 score = 4.82942 sequence = TCGTATCCTAAGTTACCG Gene: CKL_0935: Hydroxylamine reductase (EC 1.7.-.-) |
*
Clostridium novyi NT Site: position = -100 score = 5.79192 sequence = TGGTAACATAAGTTACAT Gene: NT01CX_0591: Hydroxylamine reductase (EC 1.7.-.-) |
*
Clostridium perfringens ATCC 13124 Site: position = -141 score = 5.55949 sequence = AGGTAACTTTAGTTACCG Gene: CPF_2909: Hydroxylamine reductase (EC 1.7.-.-) |
*
Clostridium tetani E88 Site: position = -106 score = 6.12734 sequence = TTGTAACATTTGTTACCG Gene: CTC00410: Hydroxylamine reductase (EC 1.7.-.-) |
Hydroxylamine reductase (EC 1.7.-.-) |
| CRON 6. | |||||||||
| frdX |
*
Clostridium acetobutylicum ATCC 824 Site: position = -101 score = 5.91881 sequence = GTGTAACATATGTTACTG Gene: CAC0885: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
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|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -77 score = 5.9164 sequence = TGGTAACATTAGTTACAG Gene: CBO2922: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
*
Clostridium kluyveri DSM 555 Site: position = -74 score = 5.48446 sequence = GTGTAACGTAAGTTACAG Gene: CKL_2419: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
*
Clostridium novyi NT Site: position = -89 score = 5.51741 sequence = TGGTAACTTAGGTTACAT Gene: NT01CX_0589: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
|
*
Clostridium tetani E88 Site: position = -93 score = 5.59866 sequence = ACGTAACATTCGTTACAG Gene: CTC01972: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
4Fe-4S ferredoxin iron-sulfur binding domain protein |
| CRON 7. | |||||||||
| CAC0758 |
*
Clostridium acetobutylicum ATCC 824 Site: position = -133 score = 4.62538 sequence = TCGTAACGAAGGATACCG Gene: CAC0758: no significant homology |
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no significant homology |
| CAC0759 |
Gene: CAC0759: Conserved protein |
*
Clostridium butyricum 5521 Site: position = -98 score = 6.18233 sequence = CTGTAACTTATGTTACAG Gene: CBY_3927: Conserved protein |
*
Clostridium beijerincki NCIMB 8052 Site: position = -178 score = 5.24286 sequence = TTGTATCATATGTTACGT Gene: Cbei_1845: Conserved protein |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -143 score = 5.00786 sequence = GAGTAACATCCGTTACAG Gene: CBO1658: Conserved protein |
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*
Clostridium perfringens ATCC 13124 Site: position = -75 score = 5.85058 sequence = AGGTAACCTATGTTACAG Gene: CPF_1730: Conserved protein |
*
Clostridium tetani E88 Site: position = -79 score = 5.74629 sequence = TGGTAACTAATGTTACAT Gene: CTC01608: Conserved protein |
Conserved protein |
| CAC2488 |
Gene: CAC0760: Conserved protein |
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Gene: Cbei_1846: Conserved protein |
Gene: CBO1659: Conserved protein |
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Gene: CPF_1729: Conserved protein |
Gene: CTC01607: Conserved protein |
Conserved protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |