Regulog BioQ - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BioQ
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - TetR
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | ||
| Saccharopolyspora erythraea NRRL 2338 | 4 | 2 |
| Saccharomonospora viridis DSM 43017 | ||
| Nakamurella multipartita DSM 44233 | ||
| Frankia sp. EAN1pec | ||
| Frankia sp. CcI3 | ||
| Acidothermus cellulolyticus 11B | ||
| Propionibacterium acnes KPA171202 | 8 | 5 |
| Nocardioides sp. JS614 | 8 | 3 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| bioB |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -63 score = 6.25966 sequence = CCTGAACGGCGTTCAGG Gene: SACE_4683: Biotin synthase (EC 2.8.1.6) |
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Propionibacterium acnes KPA171202 Site: position = 9 score = 4.63055 sequence = ATTGAATCCCGTTCAAT Site: position = 26 score = 6.25966 sequence = CCTGAACGGCGTTCAGG Gene: PPA1407: Biotin synthase (EC 2.8.1.6) |
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Nocardioides sp. JS614 Site: position = -36 score = 6.17558 sequence = CCTGAACGCTGTTCAGG Gene: Noca_3415: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioA |
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Gene: SACE_4684: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Propionibacterium acnes KPA171202 Site: position = -121 score = 5.91266 sequence = CCTGAACACTGTTCAAG Gene: PPA0967: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Noca_3414: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| bioF |
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Gene: SACE_4685: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: Noca_3413: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
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Gene: PPA0968: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Noca_3412: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| bioY |
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Propionibacterium acnes KPA171202 Site: position = -75 score = 5.63909 sequence = ACTGAACGGTGTTCAAT Gene: PPA1400: Substrate-specific component BioY of biotin ECF transporter |
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Nocardioides sp. JS614 Site: position = -39 score = 5.77142 sequence = CCTGACCACCGTTCAGG Gene: Noca_3349: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| bioM |
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Gene: PPA1399: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: Noca_3350: ATPase component BioM of energizing module of biotin ECF transporter |
ATPase component BioM of energizing module of biotin ECF transporter |
| bioN |
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Gene: PPA1398: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: Noca_3351: Transmembrane component BioN of energizing module of biotin ECF transporter |
Transmembrane component BioN of energizing module of biotin ECF transporter |
| CRON 2. | ||||||||||
| bioWF |
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Propionibacterium acnes KPA171202 Site: position = -50 score = 5.05611 sequence = ATTGAATGGTGTTCAAT Gene: PPA1866: Pimeloyl-CoA synthase (EC 6.2.1.14) / 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Pimeloyl-CoA synthase (EC 6.2.1.14) / 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| CRON 3. | ||||||||||
| bioQ |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -58 score = 6.25966 sequence = CCTGAACGCCGTTCAGG Gene: SACE_4682: Biotin repressor, TetR family |
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Propionibacterium acnes KPA171202 Site: position = -55 score = 6.25966 sequence = CCTGAACGCCGTTCAGG Gene: PPA1406: Biotin repressor, TetR family |
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Nocardioides sp. JS614 Site: position = -95 score = 5.77142 sequence = CCTGAACGGTGGTCAGG Gene: Noca_3348: Biotin repressor, TetR family |
Biotin repressor, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |