Regulog Fur - Clostridia-2
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-2
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium difficile 630 | 16 | 9 |
| Clostridium bartlettii DSM 16795 | 12 | 5 |
| Clostridium hiranonis DSM 13275 | 4 | 3 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| zupT |
*
Clostridium difficile 630 Site: position = -38 score = 6.27902 sequence = AATGATAATCAATATCAAT Gene: CD1087: Metal transporter, ZIP family |
|
*
Clostridium hiranonis DSM 13275 Site: position = -53 score = 5.3352 sequence = ATTAATATTCACTTTCATT Gene: CLOHIR_01757: Metal transporter, ZIP family |
Metal transporter, ZIP family |
| CRON 2. | ||||
| PF10087 |
*
Clostridium difficile 630 Site: position = -37 score = 5.82234 sequence = AATGAAAATCAATATCAAA Site: position = -43 score = 5.61093 sequence = AATAATAATGAAAATCAAT Site: position = -106 score = 6.0324 sequence = AATGATAATTAATATCAAT Gene: CD2499: Uncharacterized protein conserved in bacteria (DUF2325) |
*
Clostridium bartlettii DSM 16795 Site: position = -163 score = 5.35407 sequence = ACTGATAAATATTATCAAT Site: position = -103 score = 6.03211 sequence = AATGATAATCAGTATCATT Gene: CLOBAR_01156: Uncharacterized protein conserved in bacteria (DUF2325) |
*
Clostridium hiranonis DSM 13275 Site: position = -71 score = 5.48628 sequence = CATAATAATGATTATCAAA Gene: CLOHIR_00610: Uncharacterized protein conserved in bacteria (DUF2325) |
Uncharacterized protein conserved in bacteria (DUF2325) |
| CRON 3. | ||||
| fur |
*
Clostridium difficile 630 Site: position = -41 score = 5.33967 sequence = TTTAATAAAGATTATCAAT Gene: CD1287: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: CLOBAR_02180: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: CLOHIR_01204: Transcriptional regulator for iron transport and metabolism, Fur family |
Transcriptional regulator for iron transport and metabolism, Fur family |
| CRON 4. | ||||
| CD1485 |
*
Clostridium difficile 630 Site: position = -37 score = 5.43028 sequence = CTTGATATTAATTTTCATT Site: position = -74 score = 6.27902 sequence = ATTGATATTGATTATCATT Gene: CD1485: Conserved protein |
*
Clostridium bartlettii DSM 16795 Site: position = -35 score = 5.18968 sequence = GGTGATAATAATTATCAAT Site: position = -67 score = 5.44971 sequence = AATTATTATCATTATCAAT Gene: CLOBAR_01994: Conserved protein |
|
Conserved protein |
| CRON 5. | ||||
| fhuD |
*
Clostridium difficile 630 Site: position = -50 score = 5.82006 sequence = TATGATAATCAATATCATA Gene: CD2878: Ferrichrome-binding protein |
*
Clostridium bartlettii DSM 16795 Site: position = -41 score = 6.09069 sequence = ATTGATAATCATTATTAAT Gene: CLOBAR_00861: Ferrichrome-binding protein |
|
Ferrichrome-binding protein |
| fhuB |
Gene: CD2877: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
Gene: CLOBAR_00860: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
|
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) |
| fhuG |
Gene: CD2876: Ferrichrome ABC transporter permease |
Gene: CLOBAR_00859: Ferrichrome ABC transporter permease |
|
Ferrichrome ABC transporter permease |
| fhuC |
Gene: CD2875: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
Gene: CLOBAR_00858: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
|
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) |
| CRON 6. | ||||
| CD1647 |
*
Clostridium difficile 630 Site: position = -91 score = 5.30012 sequence = ATTGACAATGATAATTATT Site: position = -85 score = 5.26344 sequence = AATGATAATTATTATTGAT Site: position = -50 score = 6.02653 sequence = AATGATAATAATTTTCATT Gene: CD1647: Iron compound ABC uptake transporter permease protein |
*
Clostridium bartlettii DSM 16795 Site: position = -115 score = 5.58085 sequence = AATGATAATCGTTATCATG Gene: CLOBAR_00960: Iron compound ABC uptake transporter permease protein |
|
Iron compound ABC uptake transporter permease protein |
| CD1648 |
Gene: CD1648: Iron compound ABC uptake transporter permease protein |
Gene: CLOBAR_00959: Iron compound ABC uptake transporter permease protein |
|
Iron compound ABC uptake transporter permease protein |
| CD1649 |
Gene: CD1649: Iron compound ABC uptake transporter ATP-binding protein |
Gene: CLOBAR_00958: Iron compound ABC uptake transporter ATP-binding protein |
|
Iron compound ABC uptake transporter ATP-binding protein |
| CD1650 |
Gene: CD1650: Iron compound ABC uptake transporter substrate-binding protein |
Gene: CLOBAR_00957: Iron compound ABC uptake transporter substrate-binding protein |
|
Iron compound ABC uptake transporter substrate-binding protein |
| CRON 7. | ||||
| PF11449 |
*
Clostridium difficile 630 Site: position = -71 score = 6.23294 sequence = ATTGATATTGATTATCAAT Gene: CD1819: Predicted manganese transporter, 11 TMS |
|
|
Predicted manganese transporter, 11 TMS |
| CRON 8. | ||||
| feoA |
*2
Clostridium difficile 630 Site: position = -33 score = 5.97455 sequence = TTTGATAATGATTTTCATT Gene: CD1745A: Ferrous iron transport protein A Site: position = -33 score = 5.71828 sequence = AGTGATAATGAATTTCATT Gene: CD3273: Ferrous iron transport protein A |
*
Clostridium bartlettii DSM 16795 Site: position = -30 score = 5.66426 sequence = TATGAAAATGAATTTCATT Gene: CLOBAR_00324: Ferrous iron transport protein A |
*
Clostridium hiranonis DSM 13275 Site: position = -39 score = 6.07486 sequence = ATTGATAATGAATTTCATT Gene: CLOHIR_00731: Ferrous iron transport protein A |
Ferrous iron transport protein A |
| feoB |
Gene: CD3274: Ferrous iron transport protein B |
Gene: CLOBAR_00323: Ferrous iron transport protein B |
Gene: CLOHIR_00730: Ferrous iron transport protein B |
Ferrous iron transport protein B |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |