Regulog Fur - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 8 | 3 |
| Blautia hansenii DSM 20583 | ||
| Bryantella formatexigens DSM 14469 | ||
| Clostridiales bacterium 1_7_47_FAA | 8 | 4 |
| Clostridium bolteae ATCC BAA-613 | 11 | 4 |
| Clostridium nexile DSM 1787 | 10 | 3 |
| Clostridium scindens ATCC 35704 | 12 | 4 |
| Dorea formicigenerans ATCC 27755 | 8 | 2 |
| Dorea longicatena DSM 13814 | 12 | 5 |
| Eubacterium eligens ATCC 27750 | 8 | 3 |
| Eubacterium rectale ATCC 33656 | 8 | 3 |
| Roseburia intestinalis L1-82 | 7 | 2 |
| Ruminococcus gnavus ATCC 29149 | 2 | 1 |
| Ruminococcus lactaris ATCC 29176 | 13 | 5 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| PF12672 |
Gene: BACPEC_02120: Protein of unknown function (DUF3793) |
Gene: BLAHAN_03142: Protein of unknown function (DUF3793) |
Gene: BRYFOR_01111: Protein of unknown function (DUF3793) |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -118 score = 4.57208 sequence = TTTGAGAAATATTCCCATC Gene: Cbac1_010100027059: Protein of unknown function (DUF3793) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -289 score = 5.32527 sequence = AATGAGAAAAAAACTCAAT Gene: CLOBOL_03816: Protein of unknown function (DUF3793) |
*
Clostridium nexile DSM 1787 Site: position = -275 score = 4.70961 sequence = TTGGAGAAAAATTTTCATT Gene: CLONEX_01942: Protein of unknown function (DUF3793) |
*2
Clostridium scindens ATCC 35704 Site: position = -44 score = 5.04636 sequence = AATGATAATCAAAATCAAA Gene: CLOSCI_01154: Protein of unknown function (DUF3793) Gene: CLOSCI_00929: Protein of unknown function (DUF3793) |
*
Dorea formicigenerans ATCC 27755 Site: position = -37 score = 5.45944 sequence = AATGATAATCAAAATCAAT Gene: DORFOR_00837: Protein of unknown function (DUF3793) |
*
Dorea longicatena DSM 13814 Site: position = -125 score = 4.60655 sequence = AATGAGGATTTATGTCATT Gene: DORLON_00357: Protein of unknown function (DUF3793) |
Gene: EUBELI_00570: Protein of unknown function (DUF3793) |
Gene: EUBREC_1586: Protein of unknown function (DUF3793) |
Gene: ROSINTL182_04597: Protein of unknown function (DUF3793) |
*
Ruminococcus gnavus ATCC 29149 Site: position = -95 score = 5.6067 sequence = AATGAGAAAACTTCTCAAT Site: position = -32 score = 5.64338 sequence = ATTGAGAATCATAATCATT Gene: RUMGNA_03290: Protein of unknown function (DUF3793) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -26 score = 5.25691 sequence = AATGAGAAAAGTTCTCAAA Site: position = -1 score = 5.32198 sequence = ATTGAAAATCATTCTCAAG Site: position = 36 score = 5.40052 sequence = ATTGAAAATCATTCTCAAA Gene: RUMLAC_00863: Protein of unknown function (DUF3793) |
Protein of unknown function (DUF3793) |
| PF00258 |
Gene: BACPEC_02121: Flavodoxins |
|
Gene: BRYFOR_01112: Flavodoxins |
Gene: Cbac1_010100027064: Flavodoxins |
Gene: CLOBOL_03815: Flavodoxins |
Gene: CLONEX_01941: Flavodoxins |
Gene: CLOSCI_00928: Flavodoxins |
Gene: DORFOR_00836: Flavodoxins |
Gene: DORLON_00358: Flavodoxins |
Gene: EUBELI_00571: Flavodoxins |
Gene: EUBREC_1587: Flavodoxins |
Gene: ROSINTL182_04596: Flavodoxins |
Gene: RUMGNA_03289: Flavodoxins |
Gene: RUMLAC_00864: Flavodoxins |
Flavodoxins |
| PF10087 |
|
Gene: BLAHAN_03143: Uncharacterized protein conserved in bacteria (DUF2325) |
Gene: BRYFOR_01110: Uncharacterized protein conserved in bacteria (DUF2325) |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -167 score = 5.02608 sequence = TTTGAAAAACTTTCTCAAA Gene: Cbac1_010100005502: Uncharacterized protein conserved in bacteria (DUF2325) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -113 score = 4.92027 sequence = CATGATAAACTTTCTCATG Gene: CLOBOL_05489: Uncharacterized protein conserved in bacteria (DUF2325) |
Gene: CLONEX_01940: Uncharacterized protein conserved in bacteria (DUF2325) |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_01155: Uncharacterized protein conserved in bacteria (DUF2325) Gene: CLOSCI_00927: Uncharacterized protein conserved in bacteria (DUF2325) |
Gene: DORFOR_00835: Uncharacterized protein conserved in bacteria (DUF2325) |
*
Dorea longicatena DSM 13814 Site: position = -104 score = 5.62149 sequence = ATTGAGAAAAGTTTTCAAT Gene: DORLON_00403: Uncharacterized protein conserved in bacteria (DUF2325) |
Gene: EUBELI_00569: Uncharacterized protein conserved in bacteria (DUF2325) |
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Gene: RUMGNA_03652: Uncharacterized protein conserved in bacteria (DUF2325) |
*
Ruminococcus lactaris ATCC 29176 Site: position = -141 score = 5.47566 sequence = ATTGAGAAAAAATATCAAC Site: position = -115 score = 5.20623 sequence = ATTGATAACCATTCTCATG Gene: RUMLAC_01088: Uncharacterized protein conserved in bacteria (DUF2325) |
Uncharacterized protein conserved in bacteria (DUF2325) |
| CRON 2. | |||||||||||||||
| feoB2 |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -82 score = 5.8532 sequence = ATTGATAATGATAATCAAT Gene: BACPEC_00869: Ferrous iron transport protein B |
Gene: BLAHAN_00146: Ferrous iron transport protein B |
Gene: BRYFOR_00394: Ferrous iron transport protein B |
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Gene: CLONEX_00832: Ferrous iron transport protein B |
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*
Dorea longicatena DSM 13814 Site: position = -113 score = 4.91518 sequence = GTTGACAAAAATTATCGAT Site: position = -73 score = 5.36897 sequence = GTTGAGAAATATTATCAGT Gene: DORLON_02935: Ferrous iron transport protein B |
*
Eubacterium eligens ATCC 27750 Site: position = -57 score = 5.7972 sequence = ATTGAGAAGAATTATCAAT Gene: EUBELI_20391: Ferrous iron transport protein B |
*
Eubacterium rectale ATCC 33656 Site: position = -41 score = 5.76591 sequence = GTTGAGAAAAATTATCAAT Gene: EUBREC_1371: Ferrous iron transport protein B |
*
Roseburia intestinalis L1-82 Site: position = -42 score = 5.7304 sequence = ATCGATAAAGATTATCAAT Gene: ROSINTL182_01843: Ferrous iron transport protein B |
Gene: RUMGNA_00897: Ferrous iron transport protein B |
*
Ruminococcus lactaris ATCC 29176 Site: position = -95 score = 5.5822 sequence = AATGGTAAAAATTATCAAT Gene: RUMLAC_01521: Ferrous iron transport protein B |
Ferrous iron transport protein B |
| CRON 3. | |||||||||||||||
| BACPEC_02635 |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -38 score = 5.30537 sequence = AATGATAATCATTTACAAT Gene: BACPEC_02635: hypothetical protein |
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Gene: Cbac1_010100004977: hypothetical protein |
Gene: CLOBOL_00283: hypothetical protein |
*
Clostridium nexile DSM 1787 Site: position = -39 score = 5.44193 sequence = AATGAAATTGTTTATCATT Gene: CLONEX_01967: hypothetical protein |
*
Clostridium scindens ATCC 35704 Site: position = -58 score = 4.61531 sequence = ATTGACATATAATACCAAT Site: position = -36 score = 5.45944 sequence = AATGATAATCAAAATCAAT Gene: CLOSCI_00838: hypothetical protein |
Gene: DORFOR_00131: hypothetical protein |
*
Dorea longicatena DSM 13814 Site: position = -88 score = 5.52076 sequence = AATGAAAACATTTATCATT Gene: DORLON_00346: hypothetical protein |
*
Eubacterium eligens ATCC 27750 Site: position = -1 score = 5.8357 sequence = AATGAAAAACATTATCAAT Gene: EUBELI_00572: hypothetical protein |
*
Eubacterium rectale ATCC 33656 Site: position = -54 score = 5.20276 sequence = AATGATGTTTTTTATCATT Gene: EUBREC_1581: hypothetical protein |
*
Roseburia intestinalis L1-82 Site: position = -110 score = 5.75658 sequence = AATGAGAAAAAATATCAAT Site: position = -42 score = 5.81638 sequence = AATGAAAATCATTATCAAT Gene: ROSINTL182_04350: hypothetical protein |
Gene: RUMGNA_03678: hypothetical protein |
*
Ruminococcus lactaris ATCC 29176 Site: position = -97 score = 5.89482 sequence = AATGAAAAAAATTATCAAT Site: position = -68 score = 4.57493 sequence = GATGATTTTCAATCTCATT Gene: RUMLAC_01079: hypothetical protein |
hypothetical protein |
| feoA |
Gene: BACPEC_02636: Ferrous iron transport protein A |
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Gene: Cbac1_010100004972: Ferrous iron transport protein A |
2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_05595: Ferrous iron transport protein A Gene: CLOBOL_00282: Ferrous iron transport protein A |
Gene: CLONEX_01966: Ferrous iron transport protein A |
*2
Clostridium scindens ATCC 35704 Site: position = -74 score = 4.68852 sequence = GATGAGAAAAGATATCAAA Gene: CLOSCI_00925: Ferrous iron transport protein A Gene: CLOSCI_00837: Ferrous iron transport protein A |
Gene: DORFOR_00132: Ferrous iron transport protein A |
Gene: DORLON_00347: Ferrous iron transport protein A |
Gene: EUBELI_00573: Ferrous iron transport protein A |
Gene: EUBREC_1582: Ferrous iron transport protein A |
Gene: ROSINTL182_04349: Ferrous iron transport protein A |
Gene: RUMGNA_03677: Ferrous iron transport protein A |
Gene: RUMLAC_01080: Ferrous iron transport protein A |
Ferrous iron transport protein A |
| feoB |
Gene: BACPEC_02637: Ferrous iron transport protein B |
|
Gene: BRYFOR_03560: Ferrous iron transport protein B |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -42 score = 6.16966 sequence = ATTGATAAATTTTCTCAAT Gene: Cbac1_010100004967: Ferrous iron transport protein B |
*2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_05594: Ferrous iron transport protein B Site: position = -36 score = 6.16966 sequence = ATTGATAAATTTTCTCAAT Gene: CLOBOL_00281: Ferrous iron transport protein B |
Gene: CLONEX_01965: Ferrous iron transport protein B |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_00924: Ferrous iron transport protein B Gene: CLOSCI_00836: Ferrous iron transport protein B |
Gene: DORFOR_00133: Ferrous iron transport protein B |
Gene: DORLON_00348: Ferrous iron transport protein B |
Gene: EUBELI_00574: Ferrous iron transport protein B |
Gene: EUBREC_1583: Ferrous iron transport protein B |
Gene: ROSINTL182_04347: Ferrous iron transport protein B |
Gene: RUMGNA_03676: Ferrous iron transport protein B |
Gene: RUMLAC_01081: Ferrous iron transport protein B |
Ferrous iron transport protein B |
| CLOSCI_00835 |
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Gene: BRYFOR_03561: hypothetical protein |
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Gene: CLOSCI_00835: hypothetical protein |
Gene: DORFOR_00134: hypothetical protein |
Gene: DORLON_00349: hypothetical protein |
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Gene: RUMLAC_01082: hypothetical protein |
hypothetical protein |
| DORLON_00350 |
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Gene: DORLON_00350: hypothetical protein |
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Gene: RUMLAC_01083: hypothetical protein |
hypothetical protein |
| BACPEC_02991 |
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Gene: BRYFOR_03562: hypothetical protein |
Gene: Cbac1_010100004957: hypothetical protein |
Gene: CLOBOL_05588: hypothetical protein |
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Gene: CLOSCI_00923: hypothetical protein |
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Gene: DORLON_00351: hypothetical protein |
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Gene: RUMLAC_01084: hypothetical protein |
hypothetical protein |
| fur |
Gene: BACPEC_02639: Transcriptional regulator for iron transport and metabolism, Fur family |
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2
Clostridiales bacterium 1_7_47_FAA Gene: Cbac1_010100015165: Transcriptional regulator for iron transport and metabolism, Fur family Gene: Cbac1_010100004962: Transcriptional regulator for iron transport and metabolism, Fur family |
2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_05589: Transcriptional regulator for iron transport and metabolism, Fur family Gene: CLOBOL_05592: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: CLONEX_01963: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: CLOSCI_00922: Transcriptional regulator for iron transport and metabolism, Fur family |
*
Dorea formicigenerans ATCC 27755 Site: position = -35 score = 5.58479 sequence = ATTGACAATGATTATCATT Site: position = -29 score = 5.23867 sequence = AATGATTATCATTAACAAT Site: position = 5 score = 4.75432 sequence = AATGATAATCAGTTTCAAA Gene: DORFOR_00130: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: DORLON_00352: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: EUBELI_00576: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: EUBREC_1585: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: ROSINTL182_04345: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: RUMGNA_03679: Transcriptional regulator for iron transport and metabolism, Fur family |
Gene: RUMLAC_01085: Transcriptional regulator for iron transport and metabolism, Fur family |
Transcriptional regulator for iron transport and metabolism, Fur family |
| ROSINTL182_04348 |
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Gene: ROSINTL182_04348: hypothetical protein |
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hypothetical protein |
| ROSINTL182_04346 |
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Gene: ROSINTL182_04346: hypothetical protein |
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hypothetical protein |
| CLONEX_01964 |
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Gene: CLONEX_01964: hypothetical protein |
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Gene: EUBREC_1584: hypothetical protein |
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hypothetical protein |
| EUBELI_00575 |
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Gene: EUBELI_00575: hypothetical protein |
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hypothetical protein |
| BACPEC_02638 |
Gene: BACPEC_02638: hypothetical protein |
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hypothetical protein |
| BACPEC_03058 |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -100 score = 5.68449 sequence = AATGATAAAATTTATCATC Gene: BACPEC_03058: hypothetical protein |
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*
Clostridiales bacterium 1_7_47_FAA Site: position = -97 score = 5.48248 sequence = ACTGATATAATTTCTCAAT Gene: Cbac1_010100004952: hypothetical protein |
*2
Clostridium bolteae ATCC BAA-613 Site: position = -186 score = 5.8601 sequence = ATTGAGAAAAAATATCAAT Gene: CLOBOL_05591: hypothetical protein Gene: CLOBOL_00280: hypothetical protein |
*
Clostridium nexile DSM 1787 Site: position = -92 score = 5.70532 sequence = AATGATAAAATTTATCGAT Gene: CLONEX_01962: hypothetical protein |
*
Clostridium scindens ATCC 35704 Site: position = -194 score = 5.25123 sequence = AATGACTAAATTTCTCAAT Gene: CLOSCI_00921: hypothetical protein |
Gene: DORFOR_03340: hypothetical protein |
*
Dorea longicatena DSM 13814 Site: position = -148 score = 5.89153 sequence = GTTGATAAAATTTATCAAT Gene: DORLON_00353: hypothetical protein |
*
Eubacterium eligens ATCC 27750 Site: position = -47 score = 5.71021 sequence = ATTGAGAAGATTTCTCAAT Gene: EUBELI_00577: hypothetical protein |
*
Eubacterium rectale ATCC 33656 Site: position = -174 score = 5.7161 sequence = AGTGATAAACTTTATCAAT Gene: EUBREC_1233: hypothetical protein |
Gene: ROSINTL182_02495: hypothetical protein |
Gene: RUMGNA_03672: hypothetical protein |
*
Ruminococcus lactaris ATCC 29176 Site: position = -102 score = 5.49459 sequence = GTTGATAAAATTTATCAGT Gene: RUMLAC_01086: hypothetical protein |
hypothetical protein |
| COG2217 |
Gene: BACPEC_03059: Cation transporting ATPase |
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Gene: BRYFOR_00503: Cation transporting ATPase |
Gene: Cbac1_010100004947: Cation transporting ATPase |
2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_05590: Cation transporting ATPase Gene: CLOBOL_00279: Cation transporting ATPase |
Gene: CLONEX_01961: Cation transporting ATPase |
Gene: CLOSCI_00920: Cation transporting ATPase |
Gene: DORFOR_03339: Cation transporting ATPase |
Gene: DORLON_00354: Cation transporting ATPase |
Gene: EUBELI_00578: Cation transporting ATPase |
Gene: EUBREC_1234: Cation transporting ATPase |
Gene: ROSINTL182_02493: Cation transporting ATPase |
Gene: RUMGNA_03671: Cation transporting ATPase |
Gene: RUMLAC_01087: Cation transporting ATPase |
Cation transporting ATPase |
| CLOBOL_00278 |
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Gene: CLOBOL_00278: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |