Regulog AcnR - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | Citrate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - AcnR
- By taxonomy - Nocardiaceae
- By TF family - TetR
- By effector - Citrate
- By pathway - Tricarboxylic acid cycle
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 3 | 2 |
| Rhodococcus erythropolis PR4 | 3 | 2 |
| Rhodococcus opacus B4 | 3 | 2 |
| Rhodococcus sp. RHA1 | 3 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| icd |
*
Nocardia farcinica IFM 10152 Site: position = -144 score = 5.18038 sequence = CAGTACGCTCGTCTTG Gene: nfa9230: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Rhodococcus erythropolis PR4 Site: position = -146 score = 5.18038 sequence = CAGTACGCTTGTCTTG Gene: RER_20050: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Rhodococcus opacus B4 Site: position = -147 score = 5.18038 sequence = CAGTACGCTTGTCTTG Gene: ROP_62970: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
*
Rhodococcus sp. RHA1 Site: position = -146 score = 5.18038 sequence = CAGTACGCTTGTCTTG Gene: RHA1_ro06238: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
| CRON 2. | |||||
| acnA |
*
Nocardia farcinica IFM 10152 Site: position = -129 score = 5.78986 sequence = CAGGACAAGCGTACTG Gene: nfa34830: Aconitate hydratase (EC 4.2.1.3) |
*
Rhodococcus erythropolis PR4 Site: position = -201 score = 5.78986 sequence = CAGGACAAGCGTACTG Gene: RER_30680: Aconitate hydratase (EC 4.2.1.3) |
*
Rhodococcus opacus B4 Site: position = -158 score = 5.78986 sequence = CAGGACAAGCGTACTG Gene: ROP_69950: Aconitate hydratase (EC 4.2.1.3) |
*
Rhodococcus sp. RHA1 Site: position = -158 score = 5.78986 sequence = CAGGACAAGCGTACTG Gene: RHA1_ro07207: Aconitate hydratase (EC 4.2.1.3) |
Aconitate hydratase (EC 4.2.1.3) |
| acnR |
Gene: nfa34840: Aconitase gene transcriptional regulator AcnR, TetR family |
Gene: RER_30670: Aconitase gene transcriptional regulator AcnR, TetR family |
Gene: ROP_69940: Aconitase gene transcriptional regulator AcnR, TetR family |
Gene: RHA1_ro07206: Aconitase gene transcriptional regulator AcnR, TetR family |
Aconitase gene transcriptional regulator AcnR, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |